RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 FGFRL1Q8N441 504 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 TMEM203Q969S6 136 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 NKX3-1Q99801 234 aaPredicted RBP13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 TMEM138Q9NPI0 162 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 RBFOX1Q9NWB1 397 aaKnown RBP13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 ZNF222Q9UK12 451 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 LRRC42Q9Y546 428 aa13.21□□□□□ -0.3
CCDC28A-201ENST00000332797 SONP18583 2426 aaKnown RBP13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 FN1P02751 2386 aaKnown RBP13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 LOC105371242A0A075B767 164 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 PPIAL4CA0A0B4J2A2 164 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 IGKV1-12A0A0C4DH73 117 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 MAGEA13PA6NCF6 341 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 GABRPO00591 440 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 SIGLEC5O15389 551 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 PIN1P1O15428 100 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 CRLF1O75462 422 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 FCN3O75636 299 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 GPX5O75715 221 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 IGKV1D-12P01611 117 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 CALCBP10092 127 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 CPEP16870 476 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 ZP1P60852 638 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 KCTD21Q4G0X4 260 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 ARMCX4Q5H9R4 360 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 ZNF773Q6PK81 442 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 MED30Q96HR3 178 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 BEX2Q9BXY8 128 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 FAM192AQ9GZU8 254 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 LPAR3Q9UBY5 353 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 CDC42EP3Q9UKI2 254 aa13.2□□□□□ -0.3
CCDC28A-201ENST00000332797 SETD2Q9BYW2 2564 aaPredicted RBP13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 IGHV2-70DA0A0C4DH43 119 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 C22orf46C9J442 243 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 KNG1P01042 644 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 MAS1P04201 325 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 ALDOBP05062 364 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 PRKACAP17612 351 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 GATA3P23771 443 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 PRDX2P32119 198 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 ZNF93P35789 620 aaPredicted RBP13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 SNU13P55769 128 aaKnown RBP13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 DGUOKQ16854 277 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 CHRFAM7AQ494W8 412 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 LRRC10Q5BKY1 277 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 FAM27D1Q5T7N8 215 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 CD276Q5ZPR3 534 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 FIP1L1Q6UN15 594 aaKnown RBP13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 CEACAM19Q7Z692 300 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 PHC2Q8IXK0 858 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 SAXO1Q8IYX7 474 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 FAM58AQ8N1B3 248 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 CD177Q8N6Q3 437 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 TMEM185AQ8NFB2 350 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 TNFAIP8L1Q8WVP5 186 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 NUDT16L1Q9BRJ7 211 aaKnown RBP13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 TMPRSS13Q9BYE2 586 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 IL36RNQ9UBH0 155 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 METRNQ9UJH8 293 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 FOXJ3Q9UPW0 622 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 INSIG2Q9Y5U4 225 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 ARHGAP32A7KAX9 2087 aa13.19□□□□□ -0.3
CCDC28A-201ENST00000332797 J3QLI3 93 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 KDM4BO94953 1096 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 PSMB9P28065 219 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 OR3A4PP47883 348 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 CAPZA1P52907 286 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 PAX2Q02962 417 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 TRAM1Q15629 374 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 UBE2UQ5VVX9 321 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 BTNL3Q6UXE8 466 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 UNQ9370/PRO34162Q6UXP9 181 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 BTN2A1Q7KYR7 527 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 ZSCAN4Q8NAM6 433 aaPredicted RBP13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 ZNRF1Q8ND25 227 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 RAB40AQ8WXH6 277 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 SDSLQ96GA7 329 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 C7orf69Q9H7B7 122 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 ELL3Q9HB65 397 aaPredicted RBP13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 SLC25A10Q9UBX3 287 aaPredicted RBP13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 MAB21L2Q9Y586 359 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 SVEP1Q4LDE5 3571 aa13.18□□□□□ -0.3
CCDC28A-201ENST00000332797 ENSAO43768 121 aaKnown RBP13.17□□□□□ -0.3
CCDC28A-201ENST00000332797 SC5DO75845 299 aa13.17□□□□□ -0.3
CCDC28A-201ENST00000332797 RGS9O75916 674 aaPredicted RBP13.17□□□□□ -0.3
CCDC28A-201ENST00000332797 SFTPBP07988 381 aa13.17□□□□□ -0.3
CCDC28A-201ENST00000332797 NDUFB7P17568 137 aa13.17□□□□□ -0.3
CCDC28A-201ENST00000332797 PSMA1P25786 263 aaKnown RBP13.17□□□□□ -0.3
CCDC28A-201ENST00000332797 GABRA5P31644 462 aa13.17□□□□□ -0.3
CCDC28A-201ENST00000332797 SRP14P37108 136 aaKnown RBP13.17□□□□□ -0.3
CCDC28A-201ENST00000332797 SSX1Q16384 188 aa13.17□□□□□ -0.3
CCDC28A-201ENST00000332797 JAGN1Q8N5M9 183 aa13.17□□□□□ -0.3
CCDC28A-201ENST00000332797 PNLDC1Q8NA58 520 aaKnown RBP13.17□□□□□ -0.3
CCDC28A-201ENST00000332797 H1FXQ92522 213 aaKnown RBP13.17□□□□□ -0.3
CCDC28A-201ENST00000332797 FCGR1BQ92637 280 aa13.17□□□□□ -0.3
CCDC28A-201ENST00000332797 MRI1Q9BV20 369 aa13.17□□□□□ -0.3
CCDC28A-201ENST00000332797 TCF7L1Q9HCS4 588 aa13.17□□□□□ -0.3
CCDC28A-201ENST00000332797 HMG20AQ9NP66 347 aa13.17□□□□□ -0.3
CCDC28A-201ENST00000332797 TNFAIP8O95379 198 aa13.16□□□□□ -0.3
CCDC28A-201ENST00000332797 ECDO95905 644 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms