RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 CPAMD8Q8IZJ3 1885 aa11.78□□□□□ -0.52
CCDC88C-201ENST00000331194 CRYM-AS1A6NIL9 109 aa11.77□□□□□ -0.52
CCDC88C-201ENST00000331194 SHISA8B8ZZ34 492 aa11.77□□□□□ -0.52
CCDC88C-201ENST00000331194 SCGNO76038 276 aa11.77□□□□□ -0.52
CCDC88C-201ENST00000331194 AHSA1O95433 338 aa11.77□□□□□ -0.52
CCDC88C-201ENST00000331194 IL18BPO95998 194 aa11.77□□□□□ -0.52
CCDC88C-201ENST00000331194 GLIPR1P48060 266 aa11.77□□□□□ -0.52
CCDC88C-201ENST00000331194 MFAP5Q13361 173 aa11.77□□□□□ -0.52
CCDC88C-201ENST00000331194 DTX1Q86Y01 620 aa11.77□□□□□ -0.52
CCDC88C-201ENST00000331194 PTPMT1Q8WUK0 201 aaPredicted RBP11.77□□□□□ -0.52
CCDC88C-201ENST00000331194 AK3Q9UIJ7 227 aa11.77□□□□□ -0.52
CCDC88C-201ENST00000331194 STRAPQ9Y3F4 350 aaKnown RBP11.77□□□□□ -0.52
CCDC88C-201ENST00000331194 WSB1Q9Y6I7 421 aa11.77□□□□□ -0.52
CCDC88C-201ENST00000331194 TMEM225BP0DP42 221 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 TAS2R46P59540 309 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 FZD2Q14332 565 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 CLEC12BQ2HXU8 276 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 HIST2H3PS2Q5TEC6 136 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 PARM1Q6UWI2 310 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 FBXW12Q6X9E4 464 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 TMEM123Q8N131 208 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 ARHGEF39Q8N4T4 335 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 OR8B12Q8NGG6 310 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 OR6X1Q8NH79 312 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 TSLPQ969D9 159 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 TVP23CQ96ET8 276 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 MAGT1Q9H0U3 335 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 OR14J1Q9UGF5 321 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 NCOA6Q14686 2063 aaPredicted RBP11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 NPIPA5E9PKD4 350 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 MMP7P09237 267 aaPredicted RBP11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 CSNK1A1P48729 337 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 SUCLG1P53597 346 aaKnown RBP11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 TLE1Q04724 770 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 C16orf47Q6ZP98 133 aaPredicted RBP11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 LRP11Q86VZ4 500 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 STT3BQ8TCJ2 826 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 BMFQ96LC9 184 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 NIPSNAP3BQ9BS92 247 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 MTIF3Q9H2K0 278 aaKnown RBP11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 NPIPA1Q9UND3 350 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 KIAA2026Q5HYC2 2103 aa11.77□□□□□ -0.53
CCDC88C-201ENST00000331194 THEGLP0DJG4 465 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 FOSL2P15408 326 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 C20orf196Q8IYI0 205 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 TMEM217Q8N7C4 229 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 M1APQ8TC57 530 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 TMEM171Q8WVE6 324 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 FBLN5Q9UBX5 448 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 SLC7A11Q9UPY5 501 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 ELOA3CA0A087WX78 387 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 FTCDNL1E5RQL4 147 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 NPIPB7O75200 414 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 CD55P08174 381 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 NPSP0C0P6 89 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 PGA3P0DJD8 388 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 EPHA1P21709 976 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 PLA2G5P39877 138 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 FOXL2P58012 376 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 ZNF121P58317 390 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 HNRNPKP61978 463 aaKnown RBP eCLIP11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 EWSR1Q01844 656 aaKnown RBP eCLIP11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 C1orf61Q13536 156 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 MEX3BQ6ZN04 569 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 GPHA2Q96T91 129 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 URM1Q9BTM9 101 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 TBL1XR1Q9BZK7 514 aa11.76□□□□□ -0.53
CCDC88C-201ENST00000331194 RER1O15258 196 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 CST7O76096 145 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 ADH1BP00325 375 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 AMBPP02760 352 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 WDR25Q64LD2 544 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 CRIP3Q6Q6R5 217 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 FAM57BQ71RH2 274 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 ZNF248Q8NDW4 579 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 SLC37A2Q8TED4 501 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 RTN4IP1Q8WWV3 396 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 ASB10Q8WXI3 467 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 WFIKKN1Q96NZ8 548 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 POLR1DQ9Y2S0 133 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 GOLT1BQ9Y3E0 138 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 PLRG1O43660 514 aaKnown RBP11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 MT-ATP6P00846 226 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 IFI6P09912 130 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 PAX1P15863 534 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 PPM1FP49593 454 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 PRSS12P56730 875 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 TMEM187Q14656 261 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 ADAMTS18Q8TE60 1221 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 DDA1Q9BW61 102 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 SUSD2Q9UGT4 822 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 CCDC187A0A096LP49 1063 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 IGSF23A1L1A6 192 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 MKRN2OSH3BPM6 223 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 RAB4AP20338 218 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 IL12BP29460 328 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 BIDP55957 195 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 IGLV3-21P80748 117 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 SSPNQ14714 243 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 KISS1Q15726 138 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms