RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 IQCF6A8MYZ5 107 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 CALCBP10092 127 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 MMP15P51511 669 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 NKX6-1P78426 367 aaPredicted RBP8.57□□□□□ -1.04
HMGB3-201ENST00000325307 OR8G1Q15617 311 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 AANATQ16613 207 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 MBNL2Q5VZF2 373 aaKnown RBP8.57□□□□□ -1.04
HMGB3-201ENST00000325307 PYHIN1Q6K0P9 492 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 GLIPR1L1Q6UWM5 242 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 ST8SIA2Q92186 375 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 HYLS1Q96M11 299 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 MARVELD1Q9BSK0 173 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 ADAT1Q9BUB4 502 aaKnown RBP8.57□□□□□ -1.04
HMGB3-201ENST00000325307 MRI1Q9BV20 369 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 CA10Q9NS85 328 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 TMEM100Q9NV29 134 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 MYO18BQ8IUG5 2567 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 LOC100289279A0A1B0GTE1 492 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 PLSCR5A0PG75 271 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 CEACAM21Q3KPI0 293 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 C2orf76Q3KRA6 126 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 RNASE12Q5GAN4 147 aaKnown RBP8.57□□□□□ -1.04
HMGB3-201ENST00000325307 BEX5Q5H9J7 111 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 C1orf100Q5SVJ3 147 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 NCMAPQ5T1S8 102 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 CLEC2AQ6UVW9 174 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 LRP11Q86VZ4 500 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 TMEM171Q8WVE6 324 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 FAM46BQ96A09 425 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 PPA2Q9H2U2 334 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 MSL2Q9HCI7 577 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 ICE1Q9Y2F5 2266 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 IGHV3-64DA0A0J9YX35 117 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 VSTM5A8MXK1 200 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 ZNF732B4DXR9 585 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 CD3GP09693 182 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 ZNF250P15622 560 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 PTGFRP43088 359 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 TATDN3Q17R31 274 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 SLC22A6Q4U2R8 563 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 OR10K2Q6IF99 312 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.57□□□□□ -1.04
HMGB3-201ENST00000325307 OR8G5Q8NG78 346 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 OR10AD1Q8NGE0 317 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 PIK3IP1Q96FE7 263 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 MICU1Q9BPX6 476 aa8.57□□□□□ -1.04
HMGB3-201ENST00000325307 CHTOPQ9Y3Y2 248 aaKnown RBP8.57□□□□□ -1.04
HMGB3-201ENST00000325307 SPRY1O43609 319 aaPredicted RBP8.56□□□□□ -1.04
HMGB3-201ENST00000325307 TMEM127O75204 238 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 RRASP10301 218 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 ART1P52961 327 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 NKPD1Q17RQ9 610 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 NUP37Q8NFH4 326 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 HPSE2Q8WWQ2 592 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 RTL8AQ9BWD3 113 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 NKIRAS2Q9NYR9 191 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 ETV7Q9Y603 341 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 ALG5Q9Y673 324 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 PLCE1Q9P212 2302 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.56□□□□□ -1.04
HMGB3-201ENST00000325307 KITLGP21583 273 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 CFPP27918 469 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 RRAS2P62070 204 aaPredicted RBP8.56□□□□□ -1.04
HMGB3-201ENST00000325307 MSMPQ1L6U9 139 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 TMEM255AQ5JRV8 349 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 ZNF57Q68EA5 555 aaPredicted RBP8.56□□□□□ -1.04
HMGB3-201ENST00000325307 FAM166AQ6J272 317 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 OR5A2Q8NGI9 324 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 OR5P3Q8WZ94 311 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 DMRT1Q9Y5R6 373 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 IGKV1-27A0A075B6S5 117 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 GSTZ1O43708 216 aaPredicted RBP8.56□□□□□ -1.04
HMGB3-201ENST00000325307 ANGPTL7O43827 346 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 PTHLHP12272 177 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 PTH2RP49190 550 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 CAPZA1P52907 286 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 GNG3P63215 75 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 KRT74Q7RTS7 529 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 OR10K1Q8NGX5 313 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 OR13G1Q8NGZ3 307 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 SLC25A28Q96A46 364 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 MRPL37Q9BZE1 423 aaKnown RBP8.56□□□□□ -1.04
HMGB3-201ENST00000325307 SHARPINQ9H0F6 387 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 TAAR3PQ9P1P4 343 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 RNF115Q9Y4L5 304 aa8.56□□□□□ -1.04
HMGB3-201ENST00000325307 SPTAN1Q13813 2472 aaKnown RBP8.55□□□□□ -1.04
HMGB3-201ENST00000325307 TMEM272A0A1B0GTI8 110 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 CTDSPLO15194 276 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 CRTAPO75718 401 aaPredicted RBP8.55□□□□□ -1.04
HMGB3-201ENST00000325307 OR4A8P0C604 315 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 SERPINA2P20848 420 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 KLF9Q13886 244 aaPredicted RBP8.55□□□□□ -1.04
HMGB3-201ENST00000325307 RSU1Q15404 277 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 LYPD6Q86Y78 171 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 OR2Z1Q8NG97 314 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 SMIM4Q8WVI0 70 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 BEX2Q9BXY8 128 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 ABCG5Q9H222 651 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 PLK3Q9H4B4 646 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 MED9Q9NWA0 146 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms