RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 FZD5Q13467 585 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 MRPL23Q16540 153 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 TSPO2Q5TGU0 170 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 PIM3Q86V86 326 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 OR4D9Q8NGE8 314 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 OR4D5Q8NGN0 318 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 PLPPR1Q8TBJ4 325 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 C11orf40Q8WZ69 217 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 LSM10Q969L4 123 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 FBXL18Q96ME1 805 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 TMEM56Q96MV1 263 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 NDUFAF3Q9BU61 184 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 ZNF696Q9H7X3 374 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 PLEKHA2Q9HB19 425 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 LYRM4Q9HD34 91 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 THYN1Q9P016 225 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 CCL27Q9Y4X3 112 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 DLC1Q96QB1 1528 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 TCRBV3S1A0A5B6 114 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 M0R082 166 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 ARNTLO00327 626 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 SRSF10O75494 262 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 DXOO77932 396 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 TFF1P04155 84 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 ACSM5Q6NUN0 579 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 GLIPR1L1Q6UWM5 242 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 MRGPREQ86SM8 312 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 MDP1Q86V88 176 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 OR4A5Q8NH83 315 aa6.85□□□□□ -1.31
LIMCH1-201ENST00000313860 TRAV2A0A0B4J234 112 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 TRAV13-1A0A0B4J241 112 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 A0A1B0GU03 582 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 NDUFA3O95167 84 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 NDUFB2O95178 105 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 LEPROTL1O95214 131 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 CTSDP07339 412 aaPredicted RBP6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 PSG2P11465 335 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 ATP1B2P14415 290 aaPredicted RBP6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 RCC1P18754 421 aaPredicted RBP6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 ZBTB25P24278 435 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 GGTLC2Q14390 218 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 OR52B4Q8NGK2 314 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 OR10AC1Q8NH08 325 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 BAHD1Q8TBE0 780 aaPredicted RBP6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 AICDAQ9GZX7 198 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 PTPRMP28827 1452 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 MALP21145 153 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 FAM74A4Q5TZK3 123 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 MBNL2Q5VZF2 373 aaKnown RBP6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 FGF11Q92914 225 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 MARS2Q96GW9 593 aaKnown RBP6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 SMOC2Q9H3U7 446 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 SPHK2Q9NRA0 654 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 PIK3C2BO00750 1634 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 A0A0U1RRA0 63 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 PRSS51A0A1B0GVH4 220 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 ST8SIA5O15466 376 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 IGKV5-2P06315 115 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 ZNF688P0C7X2 276 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 VPREB1P12018 145 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 SHC1P29353 583 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 GPR6P46095 362 aaPredicted RBP6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 SEC61GP60059 68 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 FBLN7Q53RD9 439 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 C10orf128Q5T292 105 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 MANEALQ5VSG8 457 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 PAQR3Q6TCH7 311 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 TMEM179BQ7Z7N9 219 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 GBGT1Q8N5D6 347 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 TMUB1Q9BVT8 246 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 MED20Q9H944 212 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 WDR54Q9H977 334 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 SLC52A3Q9NQ40 469 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 DLL4Q9NR61 685 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 RBFOX1Q9NWB1 397 aaKnown RBP6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 FZD9O00144 591 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 TSPAN2O60636 221 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 NTSR1P30989 418 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 ATXN8Q156A1 80 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 TPTE2P1Q5T6R2 138 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 CLEC20AQ6ZU45 233 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 CLEC14AQ86T13 490 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 C1orf127Q8N9H9 656 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 ZBP1Q9H171 429 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 G6PC2Q9NQR9 355 aa6.84□□□□□ -1.31
LIMCH1-201ENST00000313860 PRRT4C9JH25 899 aa6.84□□□□□ -1.32
LIMCH1-201ENST00000313860 ZNF593O00488 134 aaPredicted RBP6.84□□□□□ -1.32
LIMCH1-201ENST00000313860 DSCR3O14972 297 aa6.84□□□□□ -1.32
LIMCH1-201ENST00000313860 HLA-DRB1P01911 266 aa6.84□□□□□ -1.32
LIMCH1-201ENST00000313860 C1QBP02746 253 aa6.84□□□□□ -1.32
LIMCH1-201ENST00000313860 C18orf21Q32NC0 220 aaPredicted RBP6.84□□□□□ -1.32
LIMCH1-201ENST00000313860 CGB2Q6NT52 195 aa6.84□□□□□ -1.32
LIMCH1-201ENST00000313860 LINC00305Q7Z4B0 112 aa6.84□□□□□ -1.32
LIMCH1-201ENST00000313860 ATP5L2Q7Z4Y8 100 aa6.84□□□□□ -1.32
LIMCH1-201ENST00000313860 BIVMQ86UB2 503 aa6.84□□□□□ -1.32
LIMCH1-201ENST00000313860 NAXDQ8IW45 347 aa6.84□□□□□ -1.32
LIMCH1-201ENST00000313860 OR52M1Q8NGK5 317 aa6.84□□□□□ -1.32
LIMCH1-201ENST00000313860 CHCHD1Q96BP2 118 aaKnown RBP6.84□□□□□ -1.32
LIMCH1-201ENST00000313860 ZG16BQ96DA0 208 aa6.84□□□□□ -1.32
LIMCH1-201ENST00000313860 ASB7Q9H672 318 aa6.84□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms