RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CD40P25942 277 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 LPAR6P43657 344 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 CA13Q8N1Q1 262 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 GMLQ99445 158 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 GAL3ST2Q9H3Q3 398 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 IGHV3-15A0A0B4J1V0 119 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 DHRS3O75911 302 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 ANKRD55Q3KP44 614 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 SARAFQ96BY9 339 aa12.41□□□□□ -0.42
CSPG4-201ENST00000308508 ERRFI1Q9UJM3 462 aaPredicted RBP12.41□□□□□ -0.42
CSPG4-201ENST00000308508 MAP1BP46821 2468 aaKnown RBP12.41□□□□□ -0.42
CSPG4-201ENST00000308508 ZNF141Q15928 474 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 NHLRC1Q6VVB1 395 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 ISOC2Q96AB3 205 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 DNAJC13O75165 2243 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 K7ESM1 405 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 SLC36A1Q7Z2H8 476 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 PERPQ96FX8 193 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 TBC1D29Q9UFV1 150 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 A0A087WUJ7 227 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 TNFRSF1AP19438 455 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 UBE2L3P68036 154 aaKnown RBP12.4□□□□□ -0.42
CSPG4-201ENST00000308508 FCGR3BO75015 233 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 C20orf196Q8IYI0 205 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 COL25A1Q9BXS0 654 aaPredicted RBP12.4□□□□□ -0.42
CSPG4-201ENST00000308508 IFITM10A6NMD0 228 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 FABP2P12104 132 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 PLP1P60201 277 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 KCNAB1Q14722 419 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 CBLN2Q8IUK8 224 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 OR10V1Q8NGI7 309 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 RSG1Q9BU20 258 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 IL36GQ9NZH8 169 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 HCFC2Q9Y5Z7 792 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 LANCL1O43813 399 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 OR13H1Q8NG92 308 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 LHFPL5Q8TAF8 219 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 IER2Q9BTL4 223 aa12.4□□□□□ -0.42
CSPG4-201ENST00000308508 NDUFB3O43676 98 aa12.4□□□□□ -0.43
CSPG4-201ENST00000308508 CD27P26842 260 aa12.4□□□□□ -0.43
CSPG4-201ENST00000308508 CEBPDP49716 269 aaPredicted RBP12.4□□□□□ -0.43
CSPG4-201ENST00000308508 OR1B1Q8NGR6 318 aa12.4□□□□□ -0.43
CSPG4-201ENST00000308508 TMPRSS13Q9BYE2 586 aa12.4□□□□□ -0.43
CSPG4-201ENST00000308508 DEFB127Q9H1M4 99 aa12.4□□□□□ -0.43
CSPG4-201ENST00000308508 ADAMTS5Q9UNA0 930 aa12.4□□□□□ -0.43
CSPG4-201ENST00000308508 SCN9AQ15858 1988 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 OR5B21A6NL26 309 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 UBE2V2Q15819 145 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 RNF165Q6ZSG1 346 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 RPS4Y2Q8TD47 263 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 MOGAT1Q96PD6 335 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 EXOGQ9Y2C4 368 aaKnown RBP12.39□□□□□ -0.43
CSPG4-201ENST00000308508 TJP1Q07157 1748 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 ANKRD20A5PA0PJZ0 165 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 DHHO43323 396 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 NOVP48745 357 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 GAMTQ14353 236 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 TGIF2LYQ8IUE0 185 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 TUSC5Q8IXB3 177 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 BCL7CQ8WUZ0 217 aaPredicted RBP12.39□□□□□ -0.43
CSPG4-201ENST00000308508 SLC25A33Q9BSK2 321 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 SIT1Q9Y3P8 196 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 TCRBV5S1A1TA0A578 114 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 DIRC3C9JPN6 131 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 CDC14BO60729 498 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 TTC32Q5I0X7 151 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 SEZ6L2Q6UXD5 910 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 OR8A1Q8NGG7 326 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 HSD17B10Q99714 261 aaKnown RBP12.39□□□□□ -0.43
CSPG4-201ENST00000308508 MBNL1Q9NR56 388 aaKnown RBP12.39□□□□□ -0.43
CSPG4-201ENST00000308508 ZNFX1Q9P2E3 1918 aaKnown RBP12.39□□□□□ -0.43
CSPG4-201ENST00000308508 KIAA0100Q14667 2235 aaKnown RBP12.39□□□□□ -0.43
CSPG4-201ENST00000308508 C5P01031 1676 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 DEFB103AP81534 67 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 WFDC8Q8IUA0 241 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 VN1R2Q8NFZ6 395 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 OR4C12Q96R67 309 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 GPR61Q9BZJ8 451 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 CLEC5AQ9NY25 188 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 SMPD2O60906 423 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 NGFP01138 241 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 ONECUT1Q9UBC0 465 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 ANKRD31Q8N7Z5 1873 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 CTDSPLO15194 276 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 F11P03951 625 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 FAM3BP58499 235 aaPredicted RBP12.39□□□□□ -0.43
CSPG4-201ENST00000308508 GABRA6Q16445 453 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 KIRREL2Q6UWL6 708 aa12.39□□□□□ -0.43
CSPG4-201ENST00000308508 OR4C46A6NHA9 309 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 CBR3O75828 277 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 CA2P00918 260 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 CDAP32320 146 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 FAM53BQ14153 422 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 TRPM6Q9BX84 2022 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 GAGE10A6NGK3 116 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 GEMIN2O14893 280 aaKnown RBP12.38□□□□□ -0.43
CSPG4-201ENST00000308508 C21orf58P58505 322 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 MICBQ29980 383 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 OR2D2Q9H210 308 aa12.38□□□□□ -0.43
CSPG4-201ENST00000308508 HAND1O96004 215 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms