RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 C21orf140B9A014 251 aa17.35■□□□□ 0.37
VPS53-201ENST00000291074 TRIM77I1YAP6 450 aa17.35■□□□□ 0.37
VPS53-201ENST00000291074 RRP8O43159 456 aaKnown RBP17.35■□□□□ 0.37
VPS53-201ENST00000291074 ZNF708P17019 499 aa17.35■□□□□ 0.37
VPS53-201ENST00000291074 FUT6P51993 359 aa17.35■□□□□ 0.37
VPS53-201ENST00000291074 PLGLB1Q02325 96 aa17.35■□□□□ 0.37
VPS53-201ENST00000291074 PIK3IP1Q96FE7 263 aa17.35■□□□□ 0.37
VPS53-201ENST00000291074 SURF2Q15527 256 aaPredicted RBP17.34■□□□□ 0.37
VPS53-201ENST00000291074 POC1AQ8NBT0 407 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 TOMM40LQ969M1 308 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 MRPS24Q96EL2 167 aaKnown RBP17.34■□□□□ 0.37
VPS53-201ENST00000291074 TEX13DA0A0J9YY54 714 aaPredicted RBP17.34■□□□□ 0.37
VPS53-201ENST00000291074 XRCC2O43543 280 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 NPBWR2P48146 333 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 PPIAP62937 165 aaKnown RBP17.34■□□□□ 0.37
VPS53-201ENST00000291074 FOXRED2Q8IWF2 684 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 OR56B2PQ8NGI1 322 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 ARHGAP21Q5T5U3 1957 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 PRRC2CQ9Y520 2896 aaKnown RBP17.34■□□□□ 0.37
VPS53-201ENST00000291074 LINC01387J3KSC0 135 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 SYNGR4O95473 234 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 IFNA2P01563 188 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 CTRB1P17538 263 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 S100A10P60903 97 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 PAN3Q58A45 887 aaKnown RBP17.34■□□□□ 0.37
VPS53-201ENST00000291074 ATP1A1-AS1Q5TC04 95 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 CTRB2Q6GPI1 263 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 Q6ZPA2 131 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 ZNF611Q8N823 705 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 C2orf50Q96LR7 162 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 PRRG4Q9BZD6 226 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 PRDM14Q9GZV8 571 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 ABI3Q9P2A4 366 aa17.34■□□□□ 0.37
VPS53-201ENST00000291074 C5orf49A4QMS7 147 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 PCNX2A6NKB5 2137 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 KRBOX1C9JBD0 128 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 TNFSF15O95150 251 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 HOXD4P09016 255 aaPredicted RBP17.33■□□□□ 0.36
VPS53-201ENST00000291074 DAZAP2Q15038 168 aaPredicted RBP17.33■□□□□ 0.36
VPS53-201ENST00000291074 PRSS54Q6PEW0 395 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 SLC25A26Q70HW3 274 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 SPSB4Q96A44 273 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 PHYHIPLQ96FC7 376 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 BCO1Q9HAY6 547 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 CYTL1Q9NRR1 136 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 RBMXP38159 391 aaKnown RBP17.33■□□□□ 0.36
VPS53-201ENST00000291074 FXYD4P59646 89 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 TAGLNQ01995 201 aaKnown RBP17.33■□□□□ 0.36
VPS53-201ENST00000291074 HES3Q5TGS1 186 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 NSUN5P2Q63ZY6 315 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 SLC22A25Q6T423 547 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 TMEM200AQ86VY9 491 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 LINC00470Q9BZP3 86 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 ZNF629Q9UEG4 869 aaPredicted RBP17.33■□□□□ 0.36
VPS53-201ENST00000291074 EDARQ9UNE0 448 aa17.33■□□□□ 0.36
VPS53-201ENST00000291074 CTSDP07339 412 aaPredicted RBP17.32■□□□□ 0.36
VPS53-201ENST00000291074 RBM39Q14498 530 aaKnown RBP17.32■□□□□ 0.36
VPS53-201ENST00000291074 COLCA1Q6ZS62 124 aa17.32■□□□□ 0.36
VPS53-201ENST00000291074 EIF4E3Q8N5X7 224 aaKnown RBP17.32■□□□□ 0.36
VPS53-201ENST00000291074 PAPOLGQ9BWT3 736 aaKnown RBP17.32■□□□□ 0.36
VPS53-201ENST00000291074 FGF23Q9GZV9 251 aaPredicted RBP17.32■□□□□ 0.36
VPS53-201ENST00000291074 LIPGQ9Y5X9 500 aa17.32■□□□□ 0.36
VPS53-201ENST00000291074 F8VVB4 439 aa17.32■□□□□ 0.36
VPS53-201ENST00000291074 F8VWA3 439 aa17.32■□□□□ 0.36
VPS53-201ENST00000291074 DTYMKP23919 212 aa17.32■□□□□ 0.36
VPS53-201ENST00000291074 MEOX1P50221 254 aa17.32■□□□□ 0.36
VPS53-201ENST00000291074 IL15RAQ13261 267 aa17.32■□□□□ 0.36
VPS53-201ENST00000291074 NECAP2Q9NVZ3 263 aa17.32■□□□□ 0.36
VPS53-201ENST00000291074 PARPBPQ9NWS1 579 aa17.32■□□□□ 0.36
VPS53-201ENST00000291074 TAS2R3Q9NYW6 316 aa17.32■□□□□ 0.36
VPS53-201ENST00000291074 TSPAN4O14817 238 aa17.31■□□□□ 0.36
VPS53-201ENST00000291074 CD79AP11912 226 aa17.31■□□□□ 0.36
VPS53-201ENST00000291074 SPINK2P20155 84 aa17.31■□□□□ 0.36
VPS53-201ENST00000291074 RBM11P57052 281 aaKnown RBP17.31■□□□□ 0.36
VPS53-201ENST00000291074 SGPP2Q8IWX5 399 aa17.31■□□□□ 0.36
VPS53-201ENST00000291074 IL36GQ9NZH8 169 aa17.31■□□□□ 0.36
VPS53-201ENST00000291074 CRYM-AS1A6NIL9 109 aa17.31■□□□□ 0.36
VPS53-201ENST00000291074 OR7C1O76099 320 aaPredicted RBP17.31■□□□□ 0.36
VPS53-201ENST00000291074 PIGPP57054 158 aa17.31■□□□□ 0.36
VPS53-201ENST00000291074 AIMP2Q13155 320 aaKnown RBP17.31■□□□□ 0.36
VPS53-201ENST00000291074 SP6Q3SY56 376 aa17.31■□□□□ 0.36
VPS53-201ENST00000291074 NRN1LQ496H8 165 aa17.31■□□□□ 0.36
VPS53-201ENST00000291074 NUFIP2Q7Z417 695 aaKnown RBP17.31■□□□□ 0.36
VPS53-201ENST00000291074 SHARPINQ9H0F6 387 aa17.31■□□□□ 0.36
VPS53-201ENST00000291074 LYL1P12980 280 aa17.3■□□□□ 0.36
VPS53-201ENST00000291074 BTN1A1Q13410 526 aa17.3■□□□□ 0.36
VPS53-201ENST00000291074 IAH1Q2TAA2 248 aaPredicted RBP17.3■□□□□ 0.36
VPS53-201ENST00000291074 OR1S2Q8NGQ3 325 aa17.3■□□□□ 0.36
VPS53-201ENST00000291074 STOML3Q8TAV4 291 aa17.3■□□□□ 0.36
VPS53-201ENST00000291074 MRPL24Q96A35 216 aaKnown RBP17.3■□□□□ 0.36
VPS53-201ENST00000291074 DECR2Q9NUI1 292 aa17.3■□□□□ 0.36
VPS53-201ENST00000291074 ASF1BQ9NVP2 202 aa17.3■□□□□ 0.36
VPS53-201ENST00000291074 C1orf123Q9NWV4 160 aa17.3■□□□□ 0.36
VPS53-201ENST00000291074 LOC400499M0QZD8 3231 aa17.3■□□□□ 0.36
VPS53-201ENST00000291074 ATP6V1G2-DDX39BF2Z307 99 aa17.3■□□□□ 0.36
VPS53-201ENST00000291074 PDCD6O75340 191 aa17.3■□□□□ 0.36
VPS53-201ENST00000291074 NGFP01138 241 aa17.3■□□□□ 0.36
VPS53-201ENST00000291074 GLI4P10075 376 aa17.3■□□□□ 0.36
VPS53-201ENST00000291074 TMED6Q8WW62 240 aa17.3■□□□□ 0.36
VPS53-201ENST00000291074 APH1AQ96BI3 265 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms