RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 WWTR1Q9GZV5 400 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 CHST11Q9NPF2 352 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 WSB1Q9Y6I7 421 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 ARGFXA6NJG6 315 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 FIGNL2A6NMB9 653 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 SSSCA1O60232 199 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 CTSEP14091 401 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 HOXB2P14652 356 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 FGF8P55075 233 aaPredicted RBP12.59□□□□□ -0.39
SDC1-201ENST00000254351 HSF1Q00613 529 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 FAM210BQ96KR6 192 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 FBRSQ9HAH7 460 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 CABIN1Q9Y6J0 2220 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 A6NCN8 305 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 EREGO14944 169 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 DXOO77932 396 aaKnown RBP12.58□□□□□ -0.4
SDC1-201ENST00000254351 SEC11BP0C7V7 166 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 TAS2R46P59540 309 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 RAB1AP62820 205 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 TDHQ8IZJ6 230 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 MALSU1Q96EH3 234 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 SHDQ96IW2 340 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 HSD17B6O14756 317 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 HLA-HP01893 362 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 FCARP24071 287 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 GFERP55789 205 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 NSDHLQ15738 373 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 MPV17LQ2QL34 196 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 DTX1Q86Y01 620 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 LRRC18Q8N456 261 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 DEFB119Q8N690 84 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 OR5T1Q8NG75 326 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 HIST1H2BLQ99880 126 aa12.58□□□□□ -0.4
SDC1-201ENST00000254351 A0A1W2PNR3 127 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 CNOT4O95628 575 aaKnown RBP12.57□□□□□ -0.4
SDC1-201ENST00000254351 POU2F2P09086 479 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 ZNF17P17021 662 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 SPINK2P20155 84 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 POLR2HP52434 150 aaKnown RBP12.57□□□□□ -0.4
SDC1-201ENST00000254351 GAB2Q9UQC2 676 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 FAM186AA6NE01 2351 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 EPOPA6NHQ4 379 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 ZNHIT1O43257 154 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 CD55P08174 381 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 FAM230AA0A1W2PPH8 454 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 A6NIZ1 184 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 CLRN1P58418 232 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 RAP1BP61224 184 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 SPIN3Q5JUX0 258 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 SLC25A24Q6NUK1 477 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 LCN15Q6UWW0 184 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 ZNF664Q8N3J9 261 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 OR5C1Q8NGR4 320 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 ASB10Q8WXI3 467 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 PLEKHA2Q9HB19 425 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 KIAA2026Q5HYC2 2103 aa12.57□□□□□ -0.4
SDC1-201ENST00000254351 CCDC187A0A096LP49 1063 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 IFNA10P01566 189 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 PGA3P0DJD8 388 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 ZNF728P0DKX0 622 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 FOLR1P15328 257 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 EWSR1Q01844 656 aaKnown RBP eCLIP12.56□□□□□ -0.4
SDC1-201ENST00000254351 FZD2Q14332 565 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 GNMTQ14749 295 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 DNM1P34Q6PK57 102 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 C9orf40Q8IXQ3 194 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 WNT16Q9UBV4 365 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 SUSD2Q9UGT4 822 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 FOXD3Q9UJU5 478 aaPredicted RBP12.56□□□□□ -0.4
SDC1-201ENST00000254351 LHFPL6Q9Y693 200 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 NBEAQ8NFP9 2946 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 ATG2AQ2TAZ0 1938 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 HMGB3O15347 200 aaKnown RBP12.56□□□□□ -0.4
SDC1-201ENST00000254351 ST8SIA3O43173 380 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 GPR137BO60478 399 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 SFTPDP35247 375 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 ESPL1Q14674 2120 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 BEND4Q6ZU67 534 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 MYPOPQ86VE0 399 aaPredicted RBP12.56□□□□□ -0.4
SDC1-201ENST00000254351 YPEL4Q96NS1 127 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 OR14J1Q9UGF5 321 aa12.56□□□□□ -0.4
SDC1-201ENST00000254351 MT-ATP6P00846 226 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 SRP19P09132 144 aaKnown RBP12.55□□□□□ -0.4
SDC1-201ENST00000254351 EPHA1P21709 976 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 ALDH3B1P43353 468 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 CSNK1A1P48729 337 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 C1QL4Q86Z23 238 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 TMEM171Q8WVE6 324 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 CPNE4Q96A23 557 aaPredicted RBP12.55□□□□□ -0.4
SDC1-201ENST00000254351 TVP23CQ96ET8 276 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 PGAM5Q96HS1 289 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 GINS3Q9BRX5 216 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 COL6A3P12111 3177 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 NKX2-6A6NCS4 301 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 TMEM150CB9EJG8 249 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 SCGNO76038 276 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 SLC6A8P48029 635 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 PPA1Q15181 289 aa12.55□□□□□ -0.4
SDC1-201ENST00000254351 CXorf66Q5JRM2 361 aaPredicted RBP12.55□□□□□ -0.4
SDC1-201ENST00000254351 LANCL3Q6ZV70 420 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 1235.3 ms