RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 CSAG2Q9Y5P2 127 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 OPN1MWP04001 364 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 HPNP05981 417 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 OPN1MW2P0DN77 364 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 OPN1MW3P0DN78 364 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 P2RY4P51582 365 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 TNFAIP6P98066 277 aaPredicted RBP11.37□□□□□ -0.59
USP40-201ENST00000251722 TM4SF19Q96DZ7 209 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 KTI12Q96EK9 354 aaPredicted RBP11.37□□□□□ -0.59
USP40-201ENST00000251722 POFUT1Q9H488 388 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 CLEC2DQ9UHP7 191 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 SIGLEC7Q9Y286 467 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 LRRC37AA6NMS7 1700 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 FAM90A27PA6NNH2 459 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 CDRT15L2A8MXV6 281 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 E5RGE8 158 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 EFSO43281 561 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 NME2P1O60361 137 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 UBE2G1P62253 170 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 TMEM229BQ8NBD8 167 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 DEFB108BQ8NET1 73 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 RDH5Q92781 318 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 GMPPAQ96IJ6 420 aaPredicted RBP11.36□□□□□ -0.59
USP40-201ENST00000251722 ALKBH3Q96Q83 286 aaPredicted RBP11.36□□□□□ -0.59
USP40-201ENST00000251722 NSG2Q9Y328 171 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 SHANK3Q9BYB0 1731 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 ZNF727A8MUV8 499 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 M0QYG6 137 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 GPX5O75715 221 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 INO80CQ6PI98 192 aaPredicted RBP11.36□□□□□ -0.59
USP40-201ENST00000251722 PINX1Q96BK5 328 aaKnown RBP11.36□□□□□ -0.59
USP40-201ENST00000251722 GRAMD2BQ96HH9 432 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 TCRBV16S1A1N1A0A5B0 115 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 B4DEV8 164 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 NGFRP08138 427 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 BRS3P32247 399 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 MRGPREQ86SM8 312 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 ZNF485Q8NCK3 441 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 OR4C3Q8NH37 302 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 THYN1Q9P016 225 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 MMP24Q9Y5R2 645 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 MASP2O00187 686 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 ZNF883P0CG24 379 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 RPL11P62913 178 aaKnown RBP11.36□□□□□ -0.59
USP40-201ENST00000251722 UBE2V2Q15819 145 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 ZNF468Q5VIY5 522 aaPredicted RBP11.36□□□□□ -0.59
USP40-201ENST00000251722 XAF1Q6GPH4 301 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 MRM1Q6IN84 353 aaKnown RBP11.36□□□□□ -0.59
USP40-201ENST00000251722 GLDNQ6ZMI3 551 aaPredicted RBP11.36□□□□□ -0.59
USP40-201ENST00000251722 OR2Z1Q8NG97 314 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 GDF15Q99988 308 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 ATG101Q9BSB4 218 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 TAAR3PQ9P1P4 343 aa11.36□□□□□ -0.59
USP40-201ENST00000251722 C5orf52A6NGY3 159 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 SLC17A3O00476 420 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 EPXP11678 715 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 GABRA4P48169 554 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 PPP1CBP62140 327 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 RASL10BQ96S79 203 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 GINS3Q9BRX5 216 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 MS4A5Q9H3V2 200 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 PLXNB2O15031 1838 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 PLPP3O14495 311 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 WDR1O75083 606 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 OR5H8P0DN80 308 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 MYF5P13349 255 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 ALOX5APP20292 161 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 ZNF83P51522 516 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 SOX8P57073 446 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 GNB1P62873 340 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 NCR3LG1Q68D85 454 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 FA2HQ7L5A8 372 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 ACTR3CQ9C0K3 210 aaPredicted RBP11.35□□□□□ -0.59
USP40-201ENST00000251722 TMED3Q9Y3Q3 217 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 LRP12Q9Y561 859 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 RAB27BO00194 218 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 SPRY3O43610 288 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 ZNF429Q86V71 674 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 OR8B3Q8NGG8 313 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 OR51H1Q8NH63 302 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 OR8B2Q96RD0 313 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 GSX1Q9H4S2 264 aaPredicted RBP11.35□□□□□ -0.59
USP40-201ENST00000251722 SIRT3Q9NTG7 399 aaPredicted RBP11.35□□□□□ -0.59
USP40-201ENST00000251722 MYO18AQ92614 2054 aaKnown RBP11.35□□□□□ -0.59
USP40-201ENST00000251722 MLF1P58340 268 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 HABP2Q14520 560 aaPredicted RBP11.35□□□□□ -0.59
USP40-201ENST00000251722 AWAT1Q58HT5 328 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 OR2G3Q8NGZ4 309 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 ZNF331Q9NQX6 463 aaPredicted RBP11.35□□□□□ -0.59
USP40-201ENST00000251722 CXorf65A6NEN9 183 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 MOSPD3O75425 235 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 LIMS3P0CW19 117 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 LIMS4P0CW20 117 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 ZBTB25P24278 435 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 DCAF10Q5QP82 559 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 SLC16A12Q6ZSM3 486 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 EIF4E3Q8N5X7 224 aaKnown RBP11.35□□□□□ -0.59
USP40-201ENST00000251722 RPEQ96AT9 228 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 ZNF426Q9BUY5 554 aa11.35□□□□□ -0.59
USP40-201ENST00000251722 PPIHO43447 177 aaKnown RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms