RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 H0Y980 276 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 AP4M1O00189 453 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 SOCS6O14544 535 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 LRP3O75074 770 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 OR2J2O76002 312 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 EDN3P14138 238 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 RARRES1P49788 294 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 FHITP49789 147 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 TAS2R40P59535 323 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF385BQ569K4 471 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 OR8G2PQ6IF36 304 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 FAHD2BQ6P2I3 314 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 DGAT2L6Q6ZPD8 337 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 DCXRQ7Z4W1 244 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 OR1L3Q8NH93 324 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF480Q8WV37 535 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 NTNG2Q96CW9 530 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 FAHD2AQ96GK7 314 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 CXorf58Q96LI9 332 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 NSUN5Q96P11 429 aaKnown RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 PEBP4Q96S96 227 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 MAGT1Q9H0U3 335 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 OR14J1Q9UGF5 321 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ZBTB32Q9Y2Y4 487 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 A0A1B0GTI1 187 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 FBLL1A6NHQ2 334 aaKnown RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 LINC01549A6NIU2 74 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 SMAD6O43541 496 aaKnown RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 WNT4P56705 351 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 NKAIN1Q4KMZ8 207 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 WDR20Q8TBZ3 569 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 SLC46A2Q9BY10 475 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 SIX2Q9NPC8 291 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 MMP26Q9NRE1 261 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 CLN8Q9UBY8 286 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 MUTYHQ9UIF7 546 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 CSAG2Q9Y5P2 127 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ADAMTS13Q76LX8 1427 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 SLC17A3O00476 420 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ATXN7O15265 892 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 HOXC11O43248 304 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 CDS2O95674 445 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 GABRA5P31644 462 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ROM1Q03395 351 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 BCL7AQ4VC05 210 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 LCN10Q6JVE6 187 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 L3HYPDHQ96EM0 354 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 PGAP2Q9UHJ9 254 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 DAPP1Q9UN19 280 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 TARM1B6A8C7 271 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 LMO1P25800 156 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 EPHA2P29317 976 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 SUCLG1P53597 346 aaKnown RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 MVDP53602 400 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 RBM11P57052 281 aaKnown RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 SNRPEP62304 92 aaKnown RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ASAH1Q13510 395 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF66Q6ZN08 573 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 AAED1Q7RTV5 226 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 MOB3BQ86TA1 216 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 VSIG10LQ86VR7 867 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 PELI3Q8N2H9 469 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 DEFB119Q8N690 84 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 SLC26A10Q8NG04 563 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 OR2AK2Q8NG84 335 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ANKRD60Q9BZ19 345 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 NPFFR1Q9GZQ6 430 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 SDCBP2Q9H190 292 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 NXT2Q9NPJ8 142 aaKnown RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 RCE1Q9Y256 329 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 KCNK7Q9Y2U2 307 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 PEAK1Q9H792 1746 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 PRSS38A1L453 326 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 FAM221AA4D161 298 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF487B1APH4 448 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 C1QBP02746 253 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 GUSBP08236 651 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ZBTB25P24278 435 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 OR1D4P47884 311 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 DSCR4P56555 118 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 FUT7Q11130 342 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 TXNRD3NBQ6F5E7 133 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ASCL4Q6XD76 172 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 MAMSTRQ6ZN01 415 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 LRRC56Q8IYG6 542 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 C12orf42Q96LP6 360 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 HBEGFQ99075 208 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 MRPL18Q9H0U6 180 aaKnown RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 C5AR2Q9P296 337 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 ANTXRLA6NF34 631 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 GNG7O60262 68 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 OR4Q2P0C623 313 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 BMP2P12643 396 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 PBX1P40424 430 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 RPS25P62851 125 aaKnown RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 CDC20Q12834 499 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 COL9A3Q14050 684 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-219ENST00000641575 GPRIN1Q7Z2K8 1008 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 IGDCC3Q8IVU1 814 aa2.51□□□□□ -2.01
SCN1A-219ENST00000641575 KRTCAP2Q8N6L1 136 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms