RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 MRPL48Q96GC5 212 aaKnown RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 PYURFQ96I23 114 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 RNF170Q96K19 258 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 Q96MT0 163 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 SCGB3A2Q96PL1 93 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 GPR21Q99679 349 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 NAPGQ99747 312 aaPredicted RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 C20orf144Q9BQM9 153 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 TXNDC17Q9BRA2 123 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 TMEM175Q9BSA9 504 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 THTPAQ9BU02 230 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 C20orf24Q9BUV8 137 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 HIGD2AQ9BW72 106 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 CALN1Q9BXU9 219 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 TBL1XR1Q9BZK7 514 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 SHCBP1LQ9BZQ2 653 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 OR2D2Q9H210 308 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 PRORYQ9H606 182 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 TMEM185BQ9H7F4 350 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 CYP3A43Q9HB55 503 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZNF160Q9HCG1 818 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 LYRM4Q9HD34 91 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 CD209Q9NNX6 404 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 RBM12B-AS1Q9P1G2 102 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 MYEF2Q9P2K5 600 aaKnown RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 PSORS1C2Q9UIG4 136 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 NDRG2Q9UN36 371 aaKnown RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 KLF13Q9Y2Y9 288 aaPredicted RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 ACOT9Q9Y305 439 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 HSPE1-MOB4S4R3N1 261 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 MROH7Q68CQ1 1323 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 PLEKHG2Q9H7P9 1386 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 NINLQ9Y2I6 1382 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 SSH2Q76I76 1423 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 SHANK3Q9BYB0 1731 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 LOXHD1Q8IVV2 1947 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 BAZ2AQ9UIF9 1905 aaKnown RBP0.01□□□□□ -2.41
VPS35-212ENST00000640313 CR1P17927 2039 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 MPDZO75970 2070 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 RTTNQ86VV8 2226 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 ROS1P08922 2347 aa0.01□□□□□ -2.41
VPS35-212ENST00000640313 IGHV2OR16-5A0A0B4J2B6 119 aa0□□□□□ -2.41
VPS35-212ENST00000640313 A0A1B0GTI1 187 aa0□□□□□ -2.41
VPS35-212ENST00000640313 A0A1B0GXF2 115 aa0□□□□□ -2.41
VPS35-212ENST00000640313 SMCO3A2RU48 225 aa0□□□□□ -2.41
VPS35-212ENST00000640313 C19orf71A6NCJ1 209 aa0□□□□□ -2.41
VPS35-212ENST00000640313 A6NED7 52 aa0□□□□□ -2.41
VPS35-212ENST00000640313 C9JQL5 133 aa0□□□□□ -2.41
VPS35-212ENST00000640313 H3BN98 237 aa0□□□□□ -2.41
VPS35-212ENST00000640313 H3BRN7 92 aa0□□□□□ -2.41
VPS35-212ENST00000640313 TEX46H3BTG2 121 aa0□□□□□ -2.41
VPS35-212ENST00000640313 J3QLI3 93 aa0□□□□□ -2.41
VPS35-212ENST00000640313 M0R1B8 84 aa0□□□□□ -2.41
VPS35-212ENST00000640313 MYL12BO14950 172 aa0□□□□□ -2.41
VPS35-212ENST00000640313 PSCAO43653 123 aa0□□□□□ -2.41
VPS35-212ENST00000640313 NDUFS5O43920 106 aa0□□□□□ -2.41
VPS35-212ENST00000640313 SH2D1AO60880 128 aa0□□□□□ -2.41
VPS35-212ENST00000640313 PLCH2O75038 1416 aa0□□□□□ -2.41
VPS35-212ENST00000640313 MPDU1O75352 247 aa0□□□□□ -2.41
VPS35-212ENST00000640313 UPK1BO75841 260 aa0□□□□□ -2.41
VPS35-212ENST00000640313 DHRS3O75911 302 aa0□□□□□ -2.41
VPS35-212ENST00000640313 SLIT2O94813 1529 aa0□□□□□ -2.41
VPS35-212ENST00000640313 OR2A4O95047 310 aa0□□□□□ -2.41
VPS35-212ENST00000640313 CCNB2O95067 398 aa0□□□□□ -2.41
VPS35-212ENST00000640313 RAB36O95755 333 aa0□□□□□ -2.41
VPS35-212ENST00000640313 TTC4O95801 387 aa0□□□□□ -2.41
VPS35-212ENST00000640313 AGTP01019 485 aa0□□□□□ -2.41
VPS35-212ENST00000640313 PDYNP01213 254 aa0□□□□□ -2.41
VPS35-212ENST00000640313 GCGP01275 180 aa0□□□□□ -2.41
VPS35-212ENST00000640313 KLK1P06870 262 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ERCC1P07992 297 aaPredicted RBP0□□□□□ -2.41
VPS35-212ENST00000640313 COL4A2P08572 1712 aa0□□□□□ -2.41
VPS35-212ENST00000640313 SNRPAP09012 282 aaKnown RBP0□□□□□ -2.41
VPS35-212ENST00000640313 GABRA1P14867 456 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ZNF7P17097 686 aaPredicted RBP0□□□□□ -2.41
VPS35-212ENST00000640313 HLA-GP17693 338 aa0□□□□□ -2.41
VPS35-212ENST00000640313 GZMHP20718 246 aa0□□□□□ -2.41
VPS35-212ENST00000640313 PRPS1L1P21108 318 aa0□□□□□ -2.41
VPS35-212ENST00000640313 CD82P27701 267 aa0□□□□□ -2.41
VPS35-212ENST00000640313 HTR2CP28335 458 aa0□□□□□ -2.41
VPS35-212ENST00000640313 GTF2E2P29084 291 aaKnown RBP0□□□□□ -2.41
VPS35-212ENST00000640313 P2RY2P41231 377 aa0□□□□□ -2.41
VPS35-212ENST00000640313 RPS5P46782 204 aaKnown RBP0□□□□□ -2.41
VPS35-212ENST00000640313 UQCRFS1P47985 274 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ZNF140P52738 457 aaPredicted RBP0□□□□□ -2.41
VPS35-212ENST00000640313 HCCSP53701 268 aa0□□□□□ -2.41
VPS35-212ENST00000640313 AP1S2P56377 157 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ATP5IP56385 69 aaPredicted RBP0□□□□□ -2.41
VPS35-212ENST00000640313 CLDN18P56856 261 aa0□□□□□ -2.41
VPS35-212ENST00000640313 MLF1P58340 268 aa0□□□□□ -2.41
VPS35-212ENST00000640313 PAFAH1B2P68402 229 aa0□□□□□ -2.41
VPS35-212ENST00000640313 RAD51Q06609 339 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ADIGQ0VDE8 80 aa0□□□□□ -2.41
VPS35-212ENST00000640313 TRDNQ13061 729 aa0□□□□□ -2.41
VPS35-212ENST00000640313 PRDX4Q13162 271 aa0□□□□□ -2.41
VPS35-212ENST00000640313 CUL2Q13617 745 aa0□□□□□ -2.41
VPS35-212ENST00000640313 TFDP2Q14188 446 aa0□□□□□ -2.41
VPS35-212ENST00000640313 CASP8Q14790 479 aa0□□□□□ -2.41
VPS35-212ENST00000640313 PMVKQ15126 192 aa0□□□□□ -2.41
VPS35-212ENST00000640313 ELOCQ15369 112 aa0□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms