RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 NICN1Q9BSH3 213 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 MARVELD1Q9BSK0 173 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 SELENOIQ9C0D9 397 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 TLNRD1Q9H1K6 362 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 IFT22Q9H7X7 185 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 ELL3Q9HB65 397 aaPredicted RBP9.04□□□□□ -0.96
CLN3-248ENST00000636355 SPACA1Q9HBV2 294 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 SH3BGRL2Q9UJC5 107 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 ING4Q9UNL4 249 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 NUBP2Q9Y5Y2 271 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 PRR14LQ5THK1 2151 aa9.04□□□□□ -0.96
CLN3-248ENST00000636355 CADP27708 2225 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 A0A0A6YYD4 124 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 IGKV1-12A0A0C4DH73 117 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 MEIOCA2RUB1 952 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 FUOMA2VDF0 154 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 CYSRT1A8MQ03 144 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 TRAPPC2LH3BP13 241 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 CCL21O00585 134 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 PDCD6O75340 191 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 PTBP3O95758 552 aaKnown RBP9.03□□□□□ -0.96
CLN3-248ENST00000636355 IGKV1D-12P01611 117 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 CD74P04233 296 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 GLAP06280 429 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 TRAPPC2P0DI81 140 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 TRAPPC2BP0DI82 140 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 NAT1P18440 290 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 CA6P23280 308 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 DTYMKP23919 212 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 MPV17P39210 176 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 PRSS12P56730 875 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 KLF3P57682 345 aaPredicted RBP9.03□□□□□ -0.96
CLN3-248ENST00000636355 SELENOVP59797 346 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 LY6DQ14210 128 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 OR8G1Q15617 311 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 CDNFQ49AH0 187 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 RNF144BQ7Z419 303 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 CALHM1Q8IU99 346 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 ZNF808Q8N4W9 903 aaPredicted RBP9.03□□□□□ -0.96
CLN3-248ENST00000636355 LILRB4Q8NHJ6 448 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 GTF3AQ92664 365 aaKnown RBP9.03□□□□□ -0.96
CLN3-248ENST00000636355 RADILQ96JH8 1075 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 OCSTAMPQ9BR26 566 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 FGF23Q9GZV9 251 aaPredicted RBP9.03□□□□□ -0.96
CLN3-248ENST00000636355 CHST6Q9GZX3 395 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 CXXC4Q9H2H0 198 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 OR51B6Q9H340 312 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 OR51I2Q9H344 312 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 BANF2Q9H503 90 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 IFT46Q9NQC8 304 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 TMEM100Q9NV29 134 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 SLC2A8Q9NY64 477 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 RCC2Q9P258 522 aaKnown RBP9.03□□□□□ -0.96
CLN3-248ENST00000636355 KLK11Q9UBX7 282 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 OSGIN2Q9Y236 505 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 CHD3Q12873 2000 aaKnown RBP9.03□□□□□ -0.96
CLN3-248ENST00000636355 HIVEP3Q5T1R4 2406 aa9.03□□□□□ -0.96
CLN3-248ENST00000636355 ATXN7O15265 892 aaPredicted RBP9.02□□□□□ -0.97
CLN3-248ENST00000636355 SPRY1O43609 319 aaPredicted RBP9.02□□□□□ -0.97
CLN3-248ENST00000636355 ANGPTL7O43827 346 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 NOS1APO75052 506 aaPredicted RBP9.02□□□□□ -0.97
CLN3-248ENST00000636355 HTR3BO95264 441 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 CHATP28329 748 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 BLVRBP30043 206 aaPredicted RBP9.02□□□□□ -0.97
CLN3-248ENST00000636355 CD200P41217 278 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 KIR2DL3P43628 341 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 TAS2R46P59540 309 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 ERVS71-1P61550 626 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 RBMS2Q15434 407 aaKnown RBP9.02□□□□□ -0.97
CLN3-248ENST00000636355 PLAC9Q5JTB6 97 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 SPIN3Q5JUX0 258 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 FIP1L1Q6UN15 594 aaKnown RBP9.02□□□□□ -0.97
CLN3-248ENST00000636355 TRAPPC6BQ86SZ2 158 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 FJX1Q86VR8 437 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 DTX3Q8N9I9 347 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 CHST4Q8NCG5 386 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 OR56B4Q8NH76 319 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 TMEM171Q8WVE6 324 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 GCDHQ92947 438 aaPredicted RBP9.02□□□□□ -0.97
CLN3-248ENST00000636355 CCDC120Q96HB5 630 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 BBC3Q96PG8 261 aaPredicted RBP9.02□□□□□ -0.97
CLN3-248ENST00000636355 NEDD4LQ96PU5 975 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 C1QTNF6Q9BXI9 259 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 CACNG6Q9BXT2 260 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 ESRP2Q9H6T0 727 aaKnown RBP9.02□□□□□ -0.97
CLN3-248ENST00000636355 HRASLSQ9HDD0 168 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 NDRG3Q9UGV2 375 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 EDARQ9UNE0 448 aa9.02□□□□□ -0.97
CLN3-248ENST00000636355 A0A1W2PP11 408 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 PLSCR5A0PG75 271 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 WIPF3A6NGB9 483 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 ZNF736B4DX44 427 aaPredicted RBP9.01□□□□□ -0.97
CLN3-248ENST00000636355 ATP6V1G2-DDX39BF2Z307 99 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 SOCS1O15524 211 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 SSX4O60224 188 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 PRAF2O60831 178 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 LILRA1O75019 489 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 TCRBP04435 133 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 SFTPBP07988 381 aa9.01□□□□□ -0.97
CLN3-248ENST00000636355 ADH4P08319 380 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms