RNA–Protein interactions for RNA: ENST00000622972.3

LINC00963-215, long intergenic non-protein coding RNA 963, human

TSL 5

Gene LINC00963, Length 444 nt, Biotype lincRNA, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC00963-215	ENST00000622972	EXOSC1	Q9Y3B2	195 aa	Known RBP	4.89	□□□□□ -1.63
LINC00963-215	ENST00000622972	PCDHGB1	Q9Y5G3	927 aa		4.89	□□□□□ -1.63
LINC00963-215	ENST00000622972	INSIG2	Q9Y5U4	225 aa		4.89	□□□□□ -1.63
LINC00963-215	ENST00000622972	PPIAL4E	A0A075B759	164 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	TRBV5-7	A0A0A0MS05	114 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	TRAV40	A0A0B4J280	105 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	PPIAL4C	A0A0B4J2A2	164 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	GGT3P	A6NGU5	568 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	DNAJC9-AS1	A6NH13	148 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	ACOD1	A6NK06	481 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	PPIAL4D	F5H284	164 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	TRAPPC2L	H3BP13	241 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	TMEM178B	H3BS89	294 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	RGS10	O43665	173 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	PSPN	O60542	156 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	RHBDL1	O75783	438 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	CST4	P01036	141 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	PPIAL4F	P0DN26	164 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	ZNF12	P17014	697 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	PRTN3	P24158	256 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	CD200	P41217	278 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	COMP	P49747	757 aa	Predicted RBP	4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	WNT4	P56705	351 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	RPS25	P62851	125 aa	Known RBP	4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	ACSM1	Q08AH1	577 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	OR8G1	Q15617	311 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	TBCE	Q15813	527 aa	Predicted RBP	4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	CEP78	Q5JTW2	689 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	RBM48	Q5RL73	367 aa	Known RBP	4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	TMEM91	Q6ZNR0	172 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	FAM220A	Q7Z4H9	259 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	CALHM1	Q8IU99	346 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	BCL6B	Q8N143	479 aa	Predicted RBP	4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	BATF2	Q8N1L9	274 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	STX19	Q8N4C7	294 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	GCSAM	Q8N6F7	178 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	DEFB108B	Q8NET1	73 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	NPRL2	Q8WTW4	380 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	GHSR	Q92847	366 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	SLC25A28	Q96A46	364 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	SMIM19	Q96E16	107 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	NEIL1	Q96FI4	390 aa	Predicted RBP	4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	ZNF488	Q96MN9	340 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	TECTB	Q96PL2	329 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	SPACA5	Q96QH8	159 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	PAPOLG	Q9BWT3	736 aa	Known RBP	4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	TLNRD1	Q9H1K6	362 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	GCM1	Q9NP62	436 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	ESM1	Q9NQ30	184 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	TNFRSF19	Q9NS68	423 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	UFSP2	Q9NUQ7	469 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	BABAM2	Q9NXR7	383 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	MRPL15	Q9P015	296 aa	Known RBP	4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	ZNF581	Q9P0T4	197 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	CLN8	Q9UBY8	286 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	PIGL	Q9Y2B2	252 aa		4.88	□□□□□ -1.63
LINC00963-215	ENST00000622972	STAB1	Q9NY15	2570 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	IGHV2-70D	A0A0C4DH43	119 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	IGKV1-12	A0A0C4DH73	117 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	TRBV2	A0A0J9YWF9	115 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	ZNF816-ZNF321P	A0A0X1KG74	233 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972		A0A1W2PPK0	400 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	PQLC2L	A1A4F0	135 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972		A6NLC8	198 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	SNTN	A6NMZ2	147 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972		A8MXK9	166 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	TNFRSF13B	O14836	293 aa	Predicted RBP	4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	SYT7	O43581	403 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	SYNGR1	O43759	233 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	GMDS	O60547	372 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	IGKV1D-12	P01611	117 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	APOC1	P02654	83 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	CRYBA1	P05813	215 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	WNT2	P09544	360 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	UBC	P0CG48	685 aa	Known RBP	4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	HKR1	P10072	659 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	SELL	P14151	372 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	IGFBP3	P17936	291 aa	Predicted RBP	4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	CD80	P33681	288 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	TGFBR1	P36897	503 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	SOX2	P48431	317 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	PITPNB	P48739	271 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	FABP5	Q01469	135 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	MED21	Q13503	144 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	TPBG	Q13641	420 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	SPHAR	Q15513	63 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	KCTD21	Q4G0X4	260 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	FAM76B	Q5HYJ3	339 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	GPR157	Q5UAW9	335 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	UBE2U	Q5VVX9	321 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	RPL22L1	Q6P5R6	122 aa	Known RBP	4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	ZNF773	Q6PK81	442 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	LYPD2	Q6UXB3	125 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	WDR82	Q6UXN9	313 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	UNQ9370/PRO34162	Q6UXP9	181 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	DOK3	Q7L591	496 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	KCTD20	Q7Z5Y7	419 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	RTN4RL2	Q86UN3	420 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	NR2C2AP	Q86WQ0	139 aa		4.87	□□□□□ -1.63
LINC00963-215	ENST00000622972	OR1M1	Q8NGA1	313 aa		4.87	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms