RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 EIF3IQ13347 325 aaKnown RBP9.21□□□□□ -0.94
CUX1-221ENST00000622516 C5orf24Q7Z6I8 188 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 PHB2Q99623 299 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 OCSTAMPQ9BR26 566 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 PARD6AQ9NPB6 346 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 COQ3Q9NZJ6 369 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 PRSS50Q9UI38 385 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 GPR160Q9UJ42 338 aa9.21□□□□□ -0.94
CUX1-221ENST00000622516 ZNF318Q5VUA4 2279 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 A0A1W2PR80 420 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 ST8SIA5O15466 376 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 ZNF250P15622 560 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 CHRFAM7AQ494W8 412 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 TOR2AQ5JU69 321 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 AADACL3Q5VUY0 350 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 COMMD7Q86VX2 200 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 FBXL14Q8N1E6 418 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 MITD1Q8WV92 249 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 TMEM230Q96A57 120 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 DMRTA2Q96SC8 542 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 GSX2Q9BZM3 304 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 hCG_38984A0A1B0GV85 526 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 RFPL4AA6NLU0 287 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 RFPL4AL1F8VTS6 287 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 RP2O75695 350 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 GLI4P10075 376 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 NPBWR2P48146 333 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 CCL11P51671 97 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 RAB14P61106 215 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 PCBD1P61457 104 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 HIKESHIQ53FT3 197 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 ZNF100Q8IYN0 542 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 ZDHHC22Q8N966 263 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 RELL2Q8NC24 303 aaPredicted RBP9.2□□□□□ -0.94
CUX1-221ENST00000622516 OR51F2Q8NH61 342 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 CXorf58Q96LI9 332 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 Q96M66 194 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 SULT4A1Q9BR01 284 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 RTBDNQ9BSG5 229 aaPredicted RBP9.2□□□□□ -0.94
CUX1-221ENST00000622516 METTL9Q9H1A3 318 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 WDR13Q9H1Z4 485 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 EDARQ9UNE0 448 aa9.2□□□□□ -0.94
CUX1-221ENST00000622516 MUC6Q6W4X9 2439 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 HMSDA8MTL9 139 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 I3L521 148 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 ALDH3B1P43353 468 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 RAB1AP62820 205 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 SLC10A1Q14973 349 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 MPPED2Q15777 294 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 PNLIPRP3Q17RR3 467 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 GSG1LQ6UXU4 331 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 LINC00518Q8N0U6 118 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 ZNF565Q8N9K5 539 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 APH1AQ96BI3 265 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 FER1L6-AS2Q96M78 137 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 NUDT16L1Q9BRJ7 211 aaKnown RBP9.19□□□□□ -0.94
CUX1-221ENST00000622516 PAPOLGQ9BWT3 736 aaKnown RBP9.19□□□□□ -0.94
CUX1-221ENST00000622516 ACKR4Q9NPB9 350 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 GHRLQ9UBU3 117 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 AK3Q9UIJ7 227 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 GPR132Q9UNW8 380 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 ESPL1Q14674 2120 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 OR6C65A6NJZ3 312 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 FIGNL2A6NMB9 653 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 NME2P1O60361 137 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 RLN2P04090 185 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 SFTPCP11686 197 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 PGAM2P15259 253 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 NME2P22392 152 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 SERPINF1P36955 418 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 ZNF124Q15973 351 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 NHLRC3Q5JS37 347 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 FAM209BQ5JX69 171 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 FAM74A1Q5RGS3 127 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 RPUSD3Q6P087 351 aaKnown RBP9.19□□□□□ -0.94
CUX1-221ENST00000622516 CLEC18BQ6UXF7 455 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 SLC25A26Q70HW3 274 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 MCEMP1Q8IX19 187 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 ZSCAN4Q8NAM6 433 aaPredicted RBP9.19□□□□□ -0.94
CUX1-221ENST00000622516 OR56B2PQ8NGI1 322 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 HS3ST6Q96QI5 342 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 PPA2Q9H2U2 334 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 LIME1Q9H400 295 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 COMMD9Q9P000 198 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 ST3GAL6Q9Y274 331 aa9.19□□□□□ -0.94
CUX1-221ENST00000622516 IGKV3D-15A0A087WSY6 115 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 F8VVB4 439 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 F8VWA3 439 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 KLRC4-KLRK1H3BQV0 150 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 IL2RAP01589 272 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 NUBP1P53384 320 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 SUPT4H1P63272 117 aaKnown RBP9.18□□□□□ -0.94
CUX1-221ENST00000622516 CNN3Q15417 329 aaKnown RBP9.18□□□□□ -0.94
CUX1-221ENST00000622516 VAX1Q5SQQ9 334 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 SUMF1Q8NBK3 374 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 MDS2Q8NDY4 140 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 OR10AD1Q8NGE0 317 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 OR5AP2Q8NGF4 316 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 SPSB1Q96BD6 273 aa9.18□□□□□ -0.94
CUX1-221ENST00000622516 ZNF2Q9BSG1 426 aaPredicted RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms