RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 FBP1P09467 338 aa10.09□□□□□ -0.79
CLIP1-219ENST00000620786 LIMS3P0CW19 117 aa10.09□□□□□ -0.79
CLIP1-219ENST00000620786 LIMS4P0CW20 117 aa10.09□□□□□ -0.79
CLIP1-219ENST00000620786 TMEM267Q0VDI3 215 aaPredicted RBP10.09□□□□□ -0.79
CLIP1-219ENST00000620786 MED30Q96HR3 178 aa10.09□□□□□ -0.79
CLIP1-219ENST00000620786 RNF7Q9UBF6 113 aa10.09□□□□□ -0.79
CLIP1-219ENST00000620786 KIAA0100Q14667 2235 aaKnown RBP10.09□□□□□ -0.79
CLIP1-219ENST00000620786 CD226Q15762 336 aa10.09□□□□□ -0.79
CLIP1-219ENST00000620786 PXDC1Q5TGL8 231 aa10.09□□□□□ -0.79
CLIP1-219ENST00000620786 ZNF485Q8NCK3 441 aa10.09□□□□□ -0.79
CLIP1-219ENST00000620786 OIT3Q8WWZ8 545 aa10.09□□□□□ -0.79
CLIP1-219ENST00000620786 TCEAL7Q9BRU2 100 aa10.09□□□□□ -0.79
CLIP1-219ENST00000620786 PRDM6Q9NQX0 595 aa10.09□□□□□ -0.79
CLIP1-219ENST00000620786 THYN1Q9P016 225 aa10.09□□□□□ -0.79
CLIP1-219ENST00000620786 AQP8O94778 261 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 LIFP15018 202 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 EPHA2P29317 976 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 OR3A1P47881 315 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 A0A1B0GVG6 124 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 A0A1W2PN81 502 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 CST2P09228 141 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 CHRNA7P36544 502 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 EVX1P49640 407 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 KIAA0040Q15053 153 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 C6orf201Q7Z4U5 140 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 HRKO00198 91 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 OR2J3O76001 311 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 PDGFAP04085 211 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 CTLA4P16410 223 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 SLC37A1P57057 533 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 STARD6P59095 220 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 H3F3AP84243 136 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 LRRC3BQ96PB8 259 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 ADGRL4Q9HBW9 690 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 DUS4LO95620 317 aaKnown RBP10.08□□□□□ -0.8
CLIP1-219ENST00000620786 HIST1H1DP16402 221 aaKnown RBP10.08□□□□□ -0.8
CLIP1-219ENST00000620786 SPINK9Q5DT21 86 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 SSX7Q7RTT5 188 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 OR2M3Q8NG83 312 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 OR13D1Q8NGV5 346 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 NEIL1Q96FI4 390 aaPredicted RBP10.08□□□□□ -0.8
CLIP1-219ENST00000620786 VSTM2LQ96N03 204 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 GPR35Q9HC97 309 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 SIRT3Q9NTG7 399 aaPredicted RBP10.08□□□□□ -0.8
CLIP1-219ENST00000620786 NPTNQ9Y639 398 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 TTC3P53804 2025 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 FXYD1O00168 92 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 NKX2-8O15522 239 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 ONECUT2O95948 504 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 HSD17B10Q99714 261 aaKnown RBP10.08□□□□□ -0.8
CLIP1-219ENST00000620786 KLK11Q9UBX7 282 aa10.08□□□□□ -0.8
CLIP1-219ENST00000620786 PNPP00491 289 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 SMIM18P0DKX4 95 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 MAGEB1P43366 347 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 OR52B4Q8NGK2 314 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 MS4A5Q9H3V2 200 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 PCOLCE2Q9UKZ9 415 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 LSM2Q9Y333 95 aaKnown RBP10.07□□□□□ -0.8
CLIP1-219ENST00000620786 ZNF727A8MUV8 499 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 MS4A18H0YCH9 400 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 FPR2P25090 351 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 MS4A18Q3C1V0 323 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 RPUSD3Q6P087 351 aaKnown RBP10.07□□□□□ -0.8
CLIP1-219ENST00000620786 RNF165Q6ZSG1 346 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 OR8B12Q8NGG6 310 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 YIPF6Q96EC8 236 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 SLC25A32Q9H2D1 315 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 DUSP21Q9H596 190 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 POMT1Q9Y6A1 747 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 TMEM127O75204 238 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 HAND1O96004 215 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 PDGFBP01127 241 aaPredicted RBP10.07□□□□□ -0.8
CLIP1-219ENST00000620786 OPN1MWP04001 364 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 WNT1P04628 370 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 GP1BAP07359 652 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 OPN1MW2P0DN77 364 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 OPN1MW3P0DN78 364 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 KRTCAP3Q53RY4 240 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 DEGS2Q6QHC5 323 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 TMED6Q8WW62 240 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 DDA1Q9BW61 102 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 ZNF665Q9H7R5 613 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 NAGKQ9UJ70 344 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 KPTNQ9Y664 436 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 TCRBV16S1A1N1A0A5B0 115 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 CYR61O00622 381 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 PRF1P14222 555 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 ZNF17P17021 662 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 BCL3P20749 454 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 C10orf90Q96M02 699 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 RHNO1Q9BSD3 238 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 CHRDL1Q9BU40 450 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 OR2H1Q9GZK4 316 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 HEXA-AS1Q9H8Q6 139 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 ZNF275Q9NSD4 429 aaPredicted RBP10.07□□□□□ -0.8
CLIP1-219ENST00000620786 TINAGQ9UJW2 476 aa10.07□□□□□ -0.8
CLIP1-219ENST00000620786 ZNF320A2RRD8 509 aa10.06□□□□□ -0.8
CLIP1-219ENST00000620786 H7BYZ3 331 aa10.06□□□□□ -0.8
CLIP1-219ENST00000620786 GABRB1P18505 474 aa10.06□□□□□ -0.8
CLIP1-219ENST00000620786 ETFDHQ16134 617 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms