RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 NRIP2Q9BQI9 281 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 MROQ9BYG7 248 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 OR51I2Q9H344 312 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 YY1AP1Q9H869 796 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 MOB1AQ9H8S9 216 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 CMC2Q9NRP2 79 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 DNAJC27Q9NZQ0 273 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 ENPP5Q9UJA9 477 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 LRRC42Q9Y546 428 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 TMEM14AQ9Y6G1 99 aa5.08□□□□□ -1.6
CUX1-220ENST00000607092 hADV38S2A0JD32 116 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 FUOMA2VDF0 154 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 RFPL4AA6NLU0 287 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 DHRS7CA6NNS2 312 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 C17orf98A8MV24 154 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 ODF3BA8MYP8 253 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 PRR23D1E9PI22 279 aaPredicted RBP5.07□□□□□ -1.6
CUX1-220ENST00000607092 RFPL4AL1F8VTS6 287 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 C3orf84H3BNL1 204 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 J3QT63 122 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 K7EIL1 84 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 SYNGR1O43759 233 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 RAMP3O60896 148 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 NXPH2O95156 264 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 TK1P04183 234 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 SEMG1P04279 462 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 ARG1P05089 322 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 HMGN1P05114 100 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 CHRM2P08172 466 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 PGA5P0DJD9 388 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 PRR23D2P0DMB1 279 aaPredicted RBP5.07□□□□□ -1.6
CUX1-220ENST00000607092 HSD17B1P14061 328 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 SELLP14151 372 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 HTR1DP28221 377 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 CEACAM3P40198 252 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 SLC34A1Q06495 639 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 EGFEM1PQ0D2K5 195 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 DYNC1I2Q13409 638 aaKnown RBP5.07□□□□□ -1.6
CUX1-220ENST00000607092 SSX2Q16385 188 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 ZNF829Q3KNS6 432 aaPredicted RBP5.07□□□□□ -1.6
CUX1-220ENST00000607092 SLC35D3Q5M8T2 416 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 C1orf146Q5VVC0 180 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 SLX4IPQ5VYV7 408 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 PLCXD3Q63HM9 321 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 OR52W1Q6IF63 320 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 CCDC144NLQ6NUI1 221 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 ZFP1Q6P2D0 407 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 HAGHLQ6PII5 290 aaPredicted RBP5.07□□□□□ -1.6
CUX1-220ENST00000607092 CD300LDQ6UXZ3 194 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 ACP7Q6ZNF0 438 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 KRT77Q7Z794 578 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 COMMD2Q86X83 199 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 Q8IYB0 196 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 ENTHD1Q8IYW4 607 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 DEFB107AQ8IZN7 70 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 LYG1Q8N1E2 194 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 THEM6Q8WUY1 208 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 OTULINQ96BN8 352 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 CDRT15Q96T59 188 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 DGCR6LQ9BY27 220 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 EGLN3Q9H6Z9 239 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 REEP1Q9H902 201 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 PCDHB16Q9NRJ7 776 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 C19orf12Q9NSK7 152 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 DNAJB9Q9UBS3 223 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 LAMP5Q9UJQ1 280 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 POMPQ9Y244 141 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 LYVE1Q9Y5Y7 322 aa5.07□□□□□ -1.6
CUX1-220ENST00000607092 FAM90A22PA8MWA6 464 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 H3BN98 237 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 K7N7A8 449 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 DLGAP1O14490 977 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 DHRS3O75911 302 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 CYB5AP00167 134 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 GYPBP06028 91 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 IGHV1-8P0DP01 117 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 ACKR3P25106 362 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 LMO1P25800 156 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 MNDAP41218 407 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 HAAOP46952 286 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 PRB3Q04118 309 aaPredicted RBP5.06□□□□□ -1.6
CUX1-220ENST00000607092 DOC2BQ14184 412 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 TRIM25Q14258 630 aaKnown RBP5.06□□□□□ -1.6
CUX1-220ENST00000607092 KPNB1Q14974 876 aaKnown RBP5.06□□□□□ -1.6
CUX1-220ENST00000607092 KLHL12Q53G59 568 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 CLVS2Q5SYC1 327 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 LINC01590Q5TEZ4 76 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 PLBD1Q6P4A8 553 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 ZNF782Q6ZMW2 699 aaPredicted RBP5.06□□□□□ -1.6
CUX1-220ENST00000607092 RTN4RL2Q86UN3 420 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 COMMD1Q8N668 190 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 ASCC1Q8N9N2 400 aaKnown RBP5.06□□□□□ -1.6
CUX1-220ENST00000607092 AQP11Q8NBQ7 271 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 CCDC54Q8NEL0 328 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 NDNFQ8TB73 568 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 ZNF596Q8TC21 504 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 C17orf50Q8WW18 174 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 HPSE2Q8WWQ2 592 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 ASB17Q8WXJ9 295 aa5.06□□□□□ -1.6
CUX1-220ENST00000607092 ZNF714Q96N38 554 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms