RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 ZNF780AO75290 641 aaPredicted RBP12.08□□□□□ -0.48
UPF1-211ENST00000600868 BPNT1O95861 308 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 ERVK11-1P61568 191 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 GPR176Q14439 515 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 DEFB113Q30KQ7 82 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 ELP2Q6IA86 826 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 GLIPR1L1Q6UWM5 242 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 LRRC75A-AS1Q8N1F1 130 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 GCSAMQ8N6F7 178 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 DYNC2LI1Q8TCX1 351 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 CEP19Q96LK0 163 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 C1orf147Q96MC9 270 aaPredicted RBP12.08□□□□□ -0.48
UPF1-211ENST00000600868 BARHL1Q9BZE3 327 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 METTL9Q9H1A3 318 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 CHODLQ9H9P2 273 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 HES4Q9HCC6 221 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 PCDHB16Q9NRJ7 776 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 RASL12Q9NYN1 266 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 DAPK2Q9UIK4 370 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 ING4Q9UNL4 249 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 NPTNQ9Y639 398 aa12.08□□□□□ -0.48
UPF1-211ENST00000600868 NBPF19A0A087WUL8 3843 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 LYNX1G3V0Z9 82 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 AKR7A2O43488 359 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 FSTL3O95633 263 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 CYB5R3P00387 301 aaPredicted RBP12.07□□□□□ -0.48
UPF1-211ENST00000600868 LYNX1P0DP58 116 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 SLC2A2P11168 524 aaPredicted RBP12.07□□□□□ -0.48
UPF1-211ENST00000600868 ARSBP15848 533 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 BCL3P20749 454 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 NPBWR2P48146 333 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 BMXP51813 675 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 CLDN12P56749 244 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 TMEM33P57088 247 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 P2RY14Q15391 338 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 RSU1Q15404 277 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 DGUOKQ16854 277 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 IDNKQ5T6J7 187 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 FAM3DQ96BQ1 224 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 KCTD12Q96CX2 325 aaKnown RBP12.07□□□□□ -0.48
UPF1-211ENST00000600868 MRI1Q9BV20 369 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 ELL3Q9HB65 397 aaPredicted RBP12.07□□□□□ -0.48
UPF1-211ENST00000600868 DCAF16Q9NXF7 216 aa12.07□□□□□ -0.48
UPF1-211ENST00000600868 CCDC59Q9P031 241 aaKnown RBP12.07□□□□□ -0.48
UPF1-211ENST00000600868 F8VVB4 439 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 F8VWA3 439 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.06□□□□□ -0.48
UPF1-211ENST00000600868 SSX4O60224 188 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 SFTPBP07988 381 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 CSF3P09919 207 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 CALCBP10092 127 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 ZNF182P17025 639 aaPredicted RBP12.06□□□□□ -0.48
UPF1-211ENST00000600868 EGR1P18146 543 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 GLRA1P23415 457 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 SOX6P35712 828 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 SCAND1P57086 179 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 QRFPP83859 136 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 DYNC1I2Q13409 638 aaKnown RBP12.06□□□□□ -0.48
UPF1-211ENST00000600868 C2orf76Q3KRA6 126 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 SLC22A6Q4U2R8 563 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 ACP7Q6ZNF0 438 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 OR2W3Q7Z3T1 314 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 CDH24Q86UP0 819 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 FAM90A1Q86YD7 464 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 FAM58AQ8N1B3 248 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 OR51D1Q8NGF3 324 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 OR10K1Q8NGX5 313 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 MRPS24Q96EL2 167 aaKnown RBP12.06□□□□□ -0.48
UPF1-211ENST00000600868 PERPQ96FX8 193 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 ZNF488Q96MN9 340 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 CST11Q9H112 138 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 LIN7BQ9HAP6 207 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 RBFOX1Q9NWB1 397 aaKnown RBP12.06□□□□□ -0.48
UPF1-211ENST00000600868 ABRACLQ9P1F3 81 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 FBLN5Q9UBX5 448 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 BAHCC1Q9P281 2608 aa12.06□□□□□ -0.48
UPF1-211ENST00000600868 A0A0B4J203 849 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 TMEM14DPA8MWL7 114 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 CLDN25C9JDP6 229 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 WNT9BO14905 357 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 LDLRAD4O15165 306 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 NXPH2O95156 264 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 HTR3BO95264 441 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 CSTBP04080 98 aaKnown RBP12.05□□□□□ -0.48
UPF1-211ENST00000600868 VSIG8P0DPA2 414 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 MUC1P15941 1255 aaPredicted RBP12.05□□□□□ -0.48
UPF1-211ENST00000600868 GIFP27352 417 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 RBMXP38159 391 aaKnown RBP12.05□□□□□ -0.48
UPF1-211ENST00000600868 PDLIM4P50479 330 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 FGF12P61328 243 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 SMIM21Q3B7S5 101 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 TEX36Q5VZQ5 186 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 PEG10Q86TG7 708 aaKnown RBP12.05□□□□□ -0.48
UPF1-211ENST00000600868 ZNF525Q8N782 197 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 KCNG3Q8TAE7 436 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 ACOT12Q8WYK0 555 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 AP3S1Q92572 193 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 EMG1Q92979 244 aaKnown RBP12.05□□□□□ -0.48
UPF1-211ENST00000600868 WDR13Q9H1Z4 485 aa12.05□□□□□ -0.48
UPF1-211ENST00000600868 HMG20AQ9NP66 347 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms