RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 BORCS7-ASMTA0A0B4J1R7 106 aa16.08■□□□□ 0.16
UPF1-210ENST00000600689 A0A1B0GV90 55 aa16.08■□□□□ 0.16
UPF1-210ENST00000600689 A0A1W2PR77 199 aa16.08■□□□□ 0.16
UPF1-210ENST00000600689 TAS2R46P59540 309 aa16.08■□□□□ 0.16
UPF1-210ENST00000600689 SPNS3Q6ZMD2 512 aa16.08■□□□□ 0.16
UPF1-210ENST00000600689 MAGT1Q9H0U3 335 aa16.08■□□□□ 0.16
UPF1-210ENST00000600689 CHST11Q9NPF2 352 aa16.08■□□□□ 0.16
UPF1-210ENST00000600689 SDK2Q58EX2 2172 aa16.08■□□□□ 0.16
UPF1-210ENST00000600689 PPIHO43447 177 aaKnown RBP16.08■□□□□ 0.16
UPF1-210ENST00000600689 ONECUT2O95948 504 aa16.08■□□□□ 0.16
UPF1-210ENST00000600689 TAGLN2P37802 199 aaKnown RBP16.08■□□□□ 0.16
UPF1-210ENST00000600689 CSNK1EP49674 416 aaKnown RBP16.08■□□□□ 0.16
UPF1-210ENST00000600689 ZNF84P51523 738 aa16.08■□□□□ 0.16
UPF1-210ENST00000600689 GABREP78334 506 aa16.08■□□□□ 0.16
UPF1-210ENST00000600689 MARS2Q96GW9 593 aaKnown RBP16.08■□□□□ 0.16
UPF1-210ENST00000600689 MEGF10Q96KG7 1140 aa16.08■□□□□ 0.16
UPF1-210ENST00000600689 VN1R1Q9GZP7 353 aa16.08■□□□□ 0.16
UPF1-210ENST00000600689 SLC35B3Q9H1N7 401 aa16.08■□□□□ 0.16
UPF1-210ENST00000600689 DOK5Q9P104 306 aa16.08■□□□□ 0.16
UPF1-210ENST00000600689 TRIOBPQ9H2D6 2365 aa16.07■□□□□ 0.16
UPF1-210ENST00000600689 FIGNL2A6NMB9 653 aa16.07■□□□□ 0.16
UPF1-210ENST00000600689 IFITM10A6NMD0 228 aa16.07■□□□□ 0.16
UPF1-210ENST00000600689 SPRY1O43609 319 aaPredicted RBP16.07■□□□□ 0.16
UPF1-210ENST00000600689 NSUN5P2Q63ZY6 315 aa16.07■□□□□ 0.16
UPF1-210ENST00000600689 OR5H8P0DN80 308 aa16.07■□□□□ 0.16
UPF1-210ENST00000600689 CD27P26842 260 aa16.07■□□□□ 0.16
UPF1-210ENST00000600689 GPX4P36969 197 aaPredicted RBP16.07■□□□□ 0.16
UPF1-210ENST00000600689 RAB5CP51148 216 aa16.07■□□□□ 0.16
UPF1-210ENST00000600689 FBXW12Q6X9E4 464 aa16.07■□□□□ 0.16
UPF1-210ENST00000600689 TMEM217Q8N7C4 229 aa16.07■□□□□ 0.16
UPF1-210ENST00000600689 GPR61Q9BZJ8 451 aa16.07■□□□□ 0.16
UPF1-210ENST00000600689 DANCRP0C864 163 aa16.06■□□□□ 0.16
UPF1-210ENST00000600689 FAM3AP98173 230 aa16.06■□□□□ 0.16
UPF1-210ENST00000600689 DEGS2Q6QHC5 323 aa16.06■□□□□ 0.16
UPF1-210ENST00000600689 C5orf24Q7Z6I8 188 aa16.06■□□□□ 0.16
UPF1-210ENST00000600689 FAM24AA6NFZ4 105 aa16.06■□□□□ 0.16
UPF1-210ENST00000600689 YKT6O15498 198 aa16.06■□□□□ 0.16
UPF1-210ENST00000600689 CXCL1P09341 107 aa16.06■□□□□ 0.16
UPF1-210ENST00000600689 CHATP28329 748 aa16.06■□□□□ 0.16
UPF1-210ENST00000600689 TLE1Q04724 770 aa16.06■□□□□ 0.16
UPF1-210ENST00000600689 HMGN3Q15651 99 aa16.06■□□□□ 0.16
UPF1-210ENST00000600689 SHDQ96IW2 340 aa16.06■□□□□ 0.16
UPF1-210ENST00000600689 PHF7Q9BWX1 381 aaPredicted RBP16.06■□□□□ 0.16
UPF1-210ENST00000600689 KLRF1Q9NZS2 232 aa16.06■□□□□ 0.16
UPF1-210ENST00000600689 TGIF2-C20orf24A0A0A6YYL0 155 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 RHPN2P1A8MT19 583 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 ZNF814B7Z6K7 855 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 WRBO00258 174 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 HSD11B2P80365 405 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 UNQ6494/PRO21346Q6UXR6 183 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 KLHL13Q9P2N7 655 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 LIPGQ9Y5X9 500 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 FAM230AA0A1W2PPH8 454 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 DBHP09172 617 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 HTR5AP47898 357 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 UBE2KP61086 200 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 OR14K1Q8NGZ2 314 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 RTN4IP1Q8WWV3 396 aaPredicted RBP16.05■□□□□ 0.16
UPF1-210ENST00000600689 TMEM234Q8WY98 164 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 SCRT1Q9BWW7 348 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 QDPRP09417 244 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 OR1D5P58170 312 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 MYBPHQ13203 477 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 UBE2V2Q15819 145 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 UEVLDQ8IX04 471 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 UBAC2Q8NBM4 344 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 GPR173Q9NS66 373 aa16.05■□□□□ 0.16
UPF1-210ENST00000600689 VSTM2BA6NLU5 285 aa16.04■□□□□ 0.16
UPF1-210ENST00000600689 CYB5BO43169 146 aa16.04■□□□□ 0.16
UPF1-210ENST00000600689 OR2G3Q8NGZ4 309 aa16.04■□□□□ 0.16
UPF1-210ENST00000600689 RAB39BQ96DA2 213 aa16.04■□□□□ 0.16
UPF1-210ENST00000600689 TAAR9Q96RI9 348 aa16.04■□□□□ 0.16
UPF1-210ENST00000600689 PBDC1Q9BVG4 233 aa16.04■□□□□ 0.16
UPF1-210ENST00000600689 GAR1Q9NY12 217 aaKnown RBP16.04■□□□□ 0.16
UPF1-210ENST00000600689 OR5H15A6NDH6 313 aa16.04■□□□□ 0.16
UPF1-210ENST00000600689 PHF1O43189 567 aaPredicted RBP16.04■□□□□ 0.16
UPF1-210ENST00000600689 EFNA2O43921 213 aa16.04■□□□□ 0.16
UPF1-210ENST00000600689 APOBEC1P41238 236 aaKnown RBP16.04■□□□□ 0.16
UPF1-210ENST00000600689 ZDHHC8Q9ULC8 765 aa16.04■□□□□ 0.16
UPF1-210ENST00000600689 KCNIP3Q9Y2W7 256 aa16.04■□□□□ 0.16
UPF1-210ENST00000600689 E5RGE8 158 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 H3BQ15 152 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 CST7O76096 145 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 IGHMP01871 453 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 GAPDHP04406 335 aaKnown RBP16.03■□□□□ 0.16
UPF1-210ENST00000600689 ZNF160Q9HCG1 818 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 PIGLQ9Y2B2 252 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 NSG2Q9Y328 171 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 HDGFL3Q9Y3E1 203 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 POMT1Q9Y6A1 747 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 TLCD2A6NGC4 264 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 TRGC2P03986 189 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 FBLP22087 321 aaKnown RBP16.03■□□□□ 0.16
UPF1-210ENST00000600689 RUNX1Q01196 453 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 CCDC54Q8NEL0 328 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 OR2AE1Q8NHA4 323 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 LILRA5A6NI73 299 aa16.03■□□□□ 0.16
UPF1-210ENST00000600689 ZNF729A6NN14 1252 aaPredicted RBP16.03■□□□□ 0.16
UPF1-210ENST00000600689 ZNF728P0DKX0 622 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms