RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 ISL1P61371 349 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 TAGLNQ01995 201 aaKnown RBP18.16■□□□□ 0.5
UPF1-207ENST00000599848 ZIC1Q15915 447 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 SIGLEC7Q9Y286 467 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 PRR35P0CG20 571 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 CD200P41217 278 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 AVPI1Q5T686 147 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 MAVSQ7Z434 540 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 C20orf196Q8IYI0 205 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 SMIM7Q9BQ49 75 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 SLC25A5P05141 298 aaKnown RBP18.16■□□□□ 0.5
UPF1-207ENST00000599848 RPL35P42766 123 aaKnown RBP18.16■□□□□ 0.5
UPF1-207ENST00000599848 KIR2DL2P43627 348 aaPredicted RBP18.16■□□□□ 0.5
UPF1-207ENST00000599848 ASAH1Q13510 395 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 AGERQ15109 404 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 ZBTB34Q8NCN2 500 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 J3QR89 54 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 PRKNO60260 465 aaPredicted RBP18.16■□□□□ 0.5
UPF1-207ENST00000599848 HIST1H1EP10412 219 aaKnown RBP18.16■□□□□ 0.5
UPF1-207ENST00000599848 TOR2AQ5JU69 321 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 MARCH1Q8TCQ1 289 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 NRG4Q8WWG1 115 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 TVP23CQ96ET8 276 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 RSRP1Q9BUV0 290 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 TMUB1Q9BVT8 246 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 RHOFQ9HBH0 211 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 PRNDQ9UKY0 176 aa18.16■□□□□ 0.5
UPF1-207ENST00000599848 PRR33A8MZF0 331 aa18.15■□□□□ 0.5
UPF1-207ENST00000599848 SHISA8B8ZZ34 492 aa18.15■□□□□ 0.5
UPF1-207ENST00000599848 GGNBP1Q5YKI7 109 aa18.15■□□□□ 0.5
UPF1-207ENST00000599848 TUSC5Q8IXB3 177 aa18.15■□□□□ 0.5
UPF1-207ENST00000599848 PERPQ96FX8 193 aa18.15■□□□□ 0.5
UPF1-207ENST00000599848 ZNF416Q9BWM5 594 aa18.15■□□□□ 0.5
UPF1-207ENST00000599848 MOGAT3Q86VF5 341 aa18.15■□□□□ 0.5
UPF1-207ENST00000599848 COMMD1Q8N668 190 aa18.15■□□□□ 0.5
UPF1-207ENST00000599848 SPNS1Q9H2V7 528 aa18.15■□□□□ 0.5
UPF1-207ENST00000599848 TMPRSS5Q9H3S3 457 aa18.15■□□□□ 0.5
UPF1-207ENST00000599848 G3V3Q6 166 aa18.15■□□□□ 0.5
UPF1-207ENST00000599848 SMPD2O60906 423 aa18.15■□□□□ 0.5
UPF1-207ENST00000599848 RPS19P39019 145 aaKnown RBP18.15■□□□□ 0.5
UPF1-207ENST00000599848 FAM53CQ9NYF3 392 aa18.15■□□□□ 0.5
UPF1-207ENST00000599848 PRSS45Q7RTY3 260 aa18.15■□□□□ 0.5
UPF1-207ENST00000599848 ALG14Q96F25 216 aa18.15■□□□□ 0.5
UPF1-207ENST00000599848 SCN7AQ01118 1682 aa18.15■□□□□ 0.5
UPF1-207ENST00000599848 OR4E1P0C645 316 aa18.14■□□□□ 0.5
UPF1-207ENST00000599848 CSRP2Q16527 193 aa18.14■□□□□ 0.5
UPF1-207ENST00000599848 RANGRFQ9HD47 186 aaPredicted RBP18.14■□□□□ 0.5
UPF1-207ENST00000599848 TRPM3Q9HCF6 1732 aaPredicted RBP18.14■□□□□ 0.5
UPF1-207ENST00000599848 CASP3P42574 277 aa18.14■□□□□ 0.49
UPF1-207ENST00000599848 PRR27Q6MZM9 219 aa18.14■□□□□ 0.49
UPF1-207ENST00000599848 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa18.14■□□□□ 0.49
UPF1-207ENST00000599848 RER1O15258 196 aa18.14■□□□□ 0.49
UPF1-207ENST00000599848 OR2J3O76001 311 aa18.14■□□□□ 0.49
UPF1-207ENST00000599848 HIST1H1DP16402 221 aaKnown RBP18.14■□□□□ 0.49
UPF1-207ENST00000599848 Q1RN00 199 aa18.14■□□□□ 0.49
UPF1-207ENST00000599848 ZNF528Q3MIS6 628 aa18.14■□□□□ 0.49
UPF1-207ENST00000599848 SLC25A32Q9H2D1 315 aa18.14■□□□□ 0.49
UPF1-207ENST00000599848 ACP1P24666 158 aa18.14■□□□□ 0.49
UPF1-207ENST00000599848 SLC24A4Q8NFF2 622 aa18.14■□□□□ 0.49
UPF1-207ENST00000599848 FBXL17Q9UF56 701 aa18.14■□□□□ 0.49
UPF1-207ENST00000599848 RCL1Q9Y2P8 373 aaKnown RBP18.14■□□□□ 0.49
UPF1-207ENST00000599848 OR13C7P0DN81 318 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 PDLIM4P50479 330 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 VN1R4Q7Z5H5 301 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 LINC01555Q8NAE3 123 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 OR2D2Q9H210 308 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 PCDHGA9Q9Y5G4 932 aaKnown RBP18.13■□□□□ 0.49
UPF1-207ENST00000599848 LIPGQ9Y5X9 500 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 ACSM4P0C7M7 580 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 CTSSP25774 331 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 OR3A1P47881 315 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 LIPT2A6NK58 231 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 B4GALT3O60512 393 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 LIFP15018 202 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 METAP1P53582 386 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 EXOSC2Q13868 293 aaKnown RBP18.13■□□□□ 0.49
UPF1-207ENST00000599848 MPV17LQ2QL34 196 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 RPUSD3Q6P087 351 aaKnown RBP18.13■□□□□ 0.49
UPF1-207ENST00000599848 ETV3LQ6ZN32 361 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 A0A1W2PS18 150 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 FAM157AC9JC47 383 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 DLL1O00548 723 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 G0S2P27469 103 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 SH2D2AQ9NP31 389 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 CCSO14618 274 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 LIMS2Q7Z4I7 341 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 SIGLECL1Q8N7X8 197 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 STXBP6Q8NFX7 210 aa18.13■□□□□ 0.49
UPF1-207ENST00000599848 A0A1B0GTH9 108 aa18.12■□□□□ 0.49
UPF1-207ENST00000599848 FAM106CPP0CH98 169 aa18.12■□□□□ 0.49
UPF1-207ENST00000599848 TMEM215Q68D42 235 aa18.12■□□□□ 0.49
UPF1-207ENST00000599848 NCR3LG1Q68D85 454 aa18.12■□□□□ 0.49
UPF1-207ENST00000599848 RFESDQ8TAC1 157 aa18.12■□□□□ 0.49
UPF1-207ENST00000599848 ASB10Q8WXI3 467 aa18.12■□□□□ 0.49
UPF1-207ENST00000599848 HAND1O96004 215 aa18.12■□□□□ 0.49
UPF1-207ENST00000599848 H3F3AP84243 136 aa18.12■□□□□ 0.49
UPF1-207ENST00000599848 LAMTOR1Q6IAA8 161 aa18.12■□□□□ 0.49
UPF1-207ENST00000599848 SSX7Q7RTT5 188 aa18.12■□□□□ 0.49
UPF1-207ENST00000599848 MRGPRDQ8TDS7 321 aa18.12■□□□□ 0.49
UPF1-207ENST00000599848 TCRBV16S1A1N1A0A5B0 115 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms