RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 TRAV14DV4A0A0A6YYC5 116 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 FAM221AA4D161 298 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 C3orf80F5H4A9 247 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 F8VVB4 439 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 F8VWA3 439 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 ARPC5O15511 151 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 ZNF205O95201 554 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 NFYAP23511 347 aaPredicted RBP12.46□□□□□ -0.42
VRK3-217ENST00000599538 CHATP28329 748 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 NBL1P41271 181 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 CBX5P45973 191 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 OR3A3P47888 321 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 SORDQ00796 357 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 MPPED2Q15777 294 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 RFPL4BQ6ZWI9 263 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 ZNF767PQ75MW2 155 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 LHFPL1Q86WI0 220 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 OSR2Q8N2R0 312 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 ARRDC1Q8N5I2 433 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 OR5AP2Q8NGF4 316 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 GMPPAQ96IJ6 420 aaPredicted RBP12.46□□□□□ -0.42
VRK3-217ENST00000599538 SEC22AQ96IW7 307 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 TAAR6Q96RI8 345 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 PRR13Q9NZ81 148 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 ST3GAL6Q9Y274 331 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 ZNF175Q9Y473 711 aa12.46□□□□□ -0.42
VRK3-217ENST00000599538 FXYD6-FXYD2A0A087WZ82 144 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 TRAV17A0A0B4J275 112 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 PQLC2LA1A4F0 135 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 OR5H14A6NHG9 310 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 PPP3CBP16298 524 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 IGHV1-2P23083 117 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 OPRM1P35372 400 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 GPM6AP51674 278 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 PLP2Q04941 152 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 SPATA46Q5T0L3 261 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 TFAP2EQ6VUC0 442 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 Q6ZPA2 131 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 OVCH2Q7RTZ1 564 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 ZSCAN4Q8NAM6 433 aaPredicted RBP12.45□□□□□ -0.42
VRK3-217ENST00000599538 PXT1Q8NFP0 134 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 OR5M8Q8NGP6 311 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 MITD1Q8WV92 249 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 PCNPQ8WW12 178 aaKnown RBP12.45□□□□□ -0.42
VRK3-217ENST00000599538 FXYD6Q9H0Q3 95 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 OSGIN2Q9Y236 505 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 ESPL1Q14674 2120 aa12.45□□□□□ -0.42
VRK3-217ENST00000599538 LYZL6O75951 148 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 SEC61A1P61619 476 aaKnown RBP12.44□□□□□ -0.42
VRK3-217ENST00000599538 OPCMLQ14982 345 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 ACTBL2Q562R1 376 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 CPNE2Q96FN4 548 aaPredicted RBP12.44□□□□□ -0.42
VRK3-217ENST00000599538 RTBDNQ9BSG5 229 aaPredicted RBP12.44□□□□□ -0.42
VRK3-217ENST00000599538 TMPRSS13Q9BYE2 586 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 CEACAM18A8MTB9 384 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 GLRA1P23415 457 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 HAAOP46952 286 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 GTF3C1Q12789 2109 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 MALLQ13021 153 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 EXOSC2Q13868 293 aaKnown RBP12.44□□□□□ -0.42
VRK3-217ENST00000599538 KCTD9Q7L273 389 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 C9orf106Q8NAJ2 232 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 SLAMF9Q96A28 289 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 LRFN3Q9BTN0 628 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 PPA2Q9H2U2 334 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 LIME1Q9H400 295 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 IL36GQ9NZH8 169 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 IL36RNQ9UBH0 155 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 DMXL2Q8TDJ6 3036 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 CACNA1GO43497 2377 aa12.44□□□□□ -0.42
VRK3-217ENST00000599538 SHANK1Q9Y566 2161 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 CD300LBA8K4G0 201 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 ZNF891A8MT65 544 aaPredicted RBP12.43□□□□□ -0.42
VRK3-217ENST00000599538 L7N2F9 121 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 CA11O75493 328 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 CEACAM4O75871 244 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 BCL3P20749 454 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 S100A1P23297 94 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 APLNRP35414 380 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 SUPT4H1P63272 117 aaKnown RBP12.43□□□□□ -0.42
VRK3-217ENST00000599538 CHRFAM7AQ494W8 412 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 VWA1Q6PCB0 445 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 PEG10Q86TG7 708 aaKnown RBP12.43□□□□□ -0.42
VRK3-217ENST00000599538 SLC30A7Q8NEW0 376 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 GP6Q9HCN6 339 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 HSF4Q9ULV5 492 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 INTS1Q8N201 2190 aaKnown RBP12.43□□□□□ -0.42
VRK3-217ENST00000599538 ATMQ13315 3056 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 M0R233 179 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 IL32P24001 234 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 RBM11P57052 281 aaKnown RBP12.43□□□□□ -0.42
VRK3-217ENST00000599538 TAS2R46P59540 309 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 FOXF2Q12947 444 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 RTP5Q14D33 572 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 GUSBP1Q15486 140 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 SLC9A3R2Q15599 337 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 LRRC37A5PQ49AS3 106 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 FAHD2BQ6P2I3 314 aaPredicted RBP12.43□□□□□ -0.42
VRK3-217ENST00000599538 FAM214BQ7L5A3 538 aa12.43□□□□□ -0.42
VRK3-217ENST00000599538 CNEP1R1Q8N9A8 125 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms