RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 C1orf174Q8IYL3 243 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 FBXL14Q8N1E6 418 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 FAM169BQ8N8A8 192 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 OR5P3Q8WZ94 311 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 STARD4Q96DR4 205 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 MGAT4CQ9UBM8 478 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 WASF3Q9UPY6 502 aa12.2□□□□□ -0.46
LIG3-205ENST00000585941 K7ENP7 123 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 ZNHIT1O43257 154 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 SMPD2O60906 423 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 IGKV3-15P01624 115 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 PMP2P02689 132 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 CSN2P05814 226 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 GIPP09681 153 aaPredicted RBP12.19□□□□□ -0.46
LIG3-205ENST00000585941 OR4E1P0C645 316 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 RAC2P15153 192 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 DTYMKP23919 212 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 SNU13P55769 128 aaKnown RBP12.19□□□□□ -0.46
LIG3-205ENST00000585941 TAS2R31P59538 309 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 RAP2BP61225 183 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 PPP1CBP62140 327 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 FOXF2Q12947 444 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 TAF9Q16594 264 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 NHLRC3Q5JS37 347 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 C6orf201Q7Z4U5 140 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 CALHM1Q8IU99 346 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 TERB2Q8NHR7 220 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 HPSE2Q8WWQ2 592 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 EMG1Q92979 244 aaKnown RBP12.19□□□□□ -0.46
LIG3-205ENST00000585941 ST6GALNAC5Q9BVH7 336 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 RHOFQ9HBH0 211 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 ZNF71Q9NQZ8 489 aaPredicted RBP12.19□□□□□ -0.46
LIG3-205ENST00000585941 DLL4Q9NR61 685 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 ST3GAL6Q9Y274 331 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 AMDHD2Q9Y303 409 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 APC2O95996 2303 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 SVILO95425 2214 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 ACACAQ13085 2346 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 CEACAM18A8MTB9 384 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 ZNF732B4DXR9 585 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 K7EM74 188 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 PDCD6O75340 191 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 OR2A4O95047 310 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 SFTPBP07988 381 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 GSTT2P0CG29 244 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 HAAOP46952 286 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 GPM6AP51674 278 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 UBE2MP61081 183 aaKnown RBP12.19□□□□□ -0.46
LIG3-205ENST00000585941 MPPED2Q15777 294 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 GRK1Q15835 563 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 NKAPLQ5M9Q1 402 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 SIGIRRQ6IA17 410 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 TMED4Q7Z7H5 227 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 RTN4RL2Q86UN3 420 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 SLC25A42Q86VD7 318 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 MUC20Q8N307 709 aaPredicted RBP12.19□□□□□ -0.46
LIG3-205ENST00000585941 ZNF610Q8N9Z0 462 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 WDR31Q8NA23 367 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 OR5AP2Q8NGF4 316 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 FAM57AQ8TBR7 257 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 ABHD17AQ96GS6 310 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 OR2A7Q96R45 310 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 PLK3Q9H4B4 646 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 ITGB1BP2Q9UKP3 347 aa12.19□□□□□ -0.46
LIG3-205ENST00000585941 TRAPPC2LH3BP13 241 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 GEMIN2O14893 280 aaKnown RBP12.18□□□□□ -0.46
LIG3-205ENST00000585941 RGS13O14921 159 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 FUT3P21217 361 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 ECI1P42126 302 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 UCNP55089 124 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 UCP2P55851 309 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 FGF12P61328 243 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 TSPAN5P62079 268 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 CHRFAM7AQ494W8 412 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 ZNF324BQ6AW86 544 aaPredicted RBP12.18□□□□□ -0.46
LIG3-205ENST00000585941 SEM1Q6ZVN7 128 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 BHLHA15Q7RTS1 189 aaPredicted RBP12.18□□□□□ -0.46
LIG3-205ENST00000585941 LINC00596Q86U02 117 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 CXorf67Q86X51 503 aaPredicted RBP12.18□□□□□ -0.46
LIG3-205ENST00000585941 OR2AK2Q8NG84 335 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 MICU1Q9BPX6 476 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 CMSS1Q9BQ75 279 aaKnown RBP12.18□□□□□ -0.46
LIG3-205ENST00000585941 PKIBQ9C010 78 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 SLA2Q9H6Q3 261 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 CELSR3Q9NYQ7 3312 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 LOC400499M0QZD8 3231 aa12.18□□□□□ -0.46
LIG3-205ENST00000585941 CELA3BP08861 270 aa12.17□□□□□ -0.46
LIG3-205ENST00000585941 IL32P24001 234 aa12.17□□□□□ -0.46
LIG3-205ENST00000585941 TBR1Q16650 682 aa12.17□□□□□ -0.46
LIG3-205ENST00000585941 MPV17LQ2QL34 196 aa12.17□□□□□ -0.46
LIG3-205ENST00000585941 PIGYQ3MUY2 71 aa12.17□□□□□ -0.46
LIG3-205ENST00000585941 OR2T2Q6IF00 324 aa12.17□□□□□ -0.46
LIG3-205ENST00000585941 NLRC3Q7RTR2 1065 aa12.17□□□□□ -0.46
LIG3-205ENST00000585941 C12orf45Q8N5I9 185 aaPredicted RBP12.17□□□□□ -0.46
LIG3-205ENST00000585941 OR10AD1Q8NGE0 317 aa12.17□□□□□ -0.46
LIG3-205ENST00000585941 OR52B4Q8NGK2 314 aa12.17□□□□□ -0.46
LIG3-205ENST00000585941 RADILQ96JH8 1075 aa12.17□□□□□ -0.46
LIG3-205ENST00000585941 RTL8AQ9BWD3 113 aa12.17□□□□□ -0.46
LIG3-205ENST00000585941 SFXN3Q9BWM7 321 aa12.17□□□□□ -0.46
LIG3-205ENST00000585941 GON7Q9BXV9 100 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms