RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ELF5Q9UKW6 265 aaPredicted RBP21.23■□□□□ 0.99
SHMT1-207ENST00000580002 NOP16Q9Y3C1 178 aaKnown RBP21.23■□□□□ 0.99
SHMT1-207ENST00000580002 TMEM210A6NLX4 147 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 B9A039 149 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 SOCS1O15524 211 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 UBBP0CG47 229 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 VEGFCP49767 419 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 IL24Q13007 206 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 OR2W3Q7Z3T1 314 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 ZSCAN4Q8NAM6 433 aaPredicted RBP21.23■□□□□ 0.99
SHMT1-207ENST00000580002 FBXW5Q969U6 566 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 SPOCK3Q9BQ16 436 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 TMEM59Q9BXS4 323 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 PKIBQ9C010 78 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 C1orf123Q9NWV4 160 aa21.23■□□□□ 0.99
SHMT1-207ENST00000580002 HS3ST1O14792 307 aa21.22■□□□□ 0.99
SHMT1-207ENST00000580002 WNT9BO14905 357 aa21.22■□□□□ 0.99
SHMT1-207ENST00000580002 RAB6AP20340 208 aa21.22■□□□□ 0.99
SHMT1-207ENST00000580002 IL18Q14116 193 aa21.22■□□□□ 0.99
SHMT1-207ENST00000580002 MOGAT3Q86VF5 341 aa21.22■□□□□ 0.99
SHMT1-207ENST00000580002 FBXL14Q8N1E6 418 aa21.22■□□□□ 0.99
SHMT1-207ENST00000580002 S100A16Q96FQ6 103 aaKnown RBP21.22■□□□□ 0.99
SHMT1-207ENST00000580002 CMTM3Q96MX0 182 aa21.22■□□□□ 0.99
SHMT1-207ENST00000580002 TLNRD1Q9H1K6 362 aa21.22■□□□□ 0.99
SHMT1-207ENST00000580002 ZMAT3Q9HA38 289 aaKnown RBP21.22■□□□□ 0.99
SHMT1-207ENST00000580002 DCAF16Q9NXF7 216 aa21.22■□□□□ 0.99
SHMT1-207ENST00000580002 GHRLQ9UBU3 117 aa21.22■□□□□ 0.99
SHMT1-207ENST00000580002 ADAM30Q9UKF2 790 aa21.22■□□□□ 0.99
SHMT1-207ENST00000580002 USP9YO00507 2555 aaPredicted RBP21.22■□□□□ 0.99
SHMT1-207ENST00000580002 RAB27BO00194 218 aa21.21■□□□□ 0.99
SHMT1-207ENST00000580002 RPS27AP62979 156 aaKnown RBP21.21■□□□□ 0.99
SHMT1-207ENST00000580002 WDR82Q6UXN9 313 aa21.21■□□□□ 0.99
SHMT1-207ENST00000580002 MKXQ8IYA7 352 aa21.21■□□□□ 0.99
SHMT1-207ENST00000580002 OR51T1Q8NGJ9 327 aa21.21■□□□□ 0.99
SHMT1-207ENST00000580002 WDR13Q9H1Z4 485 aa21.21■□□□□ 0.99
SHMT1-207ENST00000580002 DYNLRB1Q9NP97 96 aa21.21■□□□□ 0.99
SHMT1-207ENST00000580002 ZDHHC8Q9ULC8 765 aa21.21■□□□□ 0.99
SHMT1-207ENST00000580002 TRAPPC2LH3BP13 241 aa21.2■□□□□ 0.99
SHMT1-207ENST00000580002 PTBP3O95758 552 aaKnown RBP21.2■□□□□ 0.99
SHMT1-207ENST00000580002 HLA-DQB1P01920 261 aa21.2■□□□□ 0.99
SHMT1-207ENST00000580002 CSTBP04080 98 aaKnown RBP21.2■□□□□ 0.99
SHMT1-207ENST00000580002 DUSP1P28562 367 aa21.2■□□□□ 0.99
SHMT1-207ENST00000580002 PTH2RP49190 550 aa21.2■□□□□ 0.99
SHMT1-207ENST00000580002 ZNF846Q147U1 533 aa21.2■□□□□ 0.99
SHMT1-207ENST00000580002 TAF9Q16594 264 aa21.2■□□□□ 0.99
SHMT1-207ENST00000580002 TMEM200AQ86VY9 491 aa21.2■□□□□ 0.99
SHMT1-207ENST00000580002 SAXO1Q8IYX7 474 aa21.2■□□□□ 0.99
SHMT1-207ENST00000580002 S100ZQ8WXG8 99 aa21.2■□□□□ 0.99
SHMT1-207ENST00000580002 RAB40AQ8WXH6 277 aa21.2■□□□□ 0.99
SHMT1-207ENST00000580002 PTX4Q96A99 478 aa21.2■□□□□ 0.99
SHMT1-207ENST00000580002 CST11Q9H112 138 aa21.2■□□□□ 0.99
SHMT1-207ENST00000580002 UBTD1Q9HAC8 227 aa21.2■□□□□ 0.99
SHMT1-207ENST00000580002 HMG20AQ9NP66 347 aa21.2■□□□□ 0.99
SHMT1-207ENST00000580002 IL36GQ9NZH8 169 aa21.2■□□□□ 0.99
SHMT1-207ENST00000580002 AKAP6Q13023 2319 aa21.2■□□□□ 0.98
SHMT1-207ENST00000580002 TRAV18A0A075B6X5 111 aa21.2■□□□□ 0.98
SHMT1-207ENST00000580002 FAM221AA4D161 298 aa21.2■□□□□ 0.98
SHMT1-207ENST00000580002 DANCRP0C864 163 aa21.2■□□□□ 0.98
SHMT1-207ENST00000580002 TMEM50BP56557 158 aa21.2■□□□□ 0.98
SHMT1-207ENST00000580002 RNASE12Q5GAN4 147 aaKnown RBP21.2■□□□□ 0.98
SHMT1-207ENST00000580002 OSR2Q8N2R0 312 aa21.2■□□□□ 0.98
SHMT1-207ENST00000580002 Q96M66 194 aa21.2■□□□□ 0.98
SHMT1-207ENST00000580002 SRRQ9GZT4 340 aa21.2■□□□□ 0.98
SHMT1-207ENST00000580002 CACNG2Q9Y698 323 aa21.2■□□□□ 0.98
SHMT1-207ENST00000580002 CRYBG3Q68DQ2 2970 aa21.19■□□□□ 0.98
SHMT1-207ENST00000580002 GEMIN2O14893 280 aaKnown RBP21.19■□□□□ 0.98
SHMT1-207ENST00000580002 EGR1P18146 543 aa21.19■□□□□ 0.98
SHMT1-207ENST00000580002 GABRR1P24046 479 aa21.19■□□□□ 0.98
SHMT1-207ENST00000580002 TAS2R20P59543 309 aa21.19■□□□□ 0.98
SHMT1-207ENST00000580002 ERVK11-1P61568 191 aa21.19■□□□□ 0.98
SHMT1-207ENST00000580002 ZNF45Q02386 682 aa21.19■□□□□ 0.98
SHMT1-207ENST00000580002 FAM201AQ5SY85 155 aa21.19■□□□□ 0.98
SHMT1-207ENST00000580002 C19orf18Q8NEA5 215 aa21.19■□□□□ 0.98
SHMT1-207ENST00000580002 IL19Q9UHD0 177 aa21.19■□□□□ 0.98
SHMT1-207ENST00000580002 hCG_1807616A0A1W2PRN6 198 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 TFF1P04155 84 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 PGA5P0DJD9 388 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 GTF2F2P13984 249 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 PITPNBP48739 271 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 TMEM69Q5SWH9 247 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 OLFML2AQ68BL7 652 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 SIGIRRQ6IA17 410 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 BRICD5Q6PL45 260 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 Q8NFD4 153 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 NRIP2Q9BQI9 281 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 GCM1Q9NP62 436 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 ST3GAL6Q9Y274 331 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 XRCC3O43542 346 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 CYB5AP00167 134 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 ADH4P08319 380 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 PRKACAP17612 351 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 TALDO1P37837 337 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 SRP9P49458 86 aaKnown RBP21.18■□□□□ 0.98
SHMT1-207ENST00000580002 CAPZA1P52907 286 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 IFITM3Q01628 133 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 BAK1Q16611 211 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 PYDC2Q56P42 97 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 PLAC9Q5JTB6 97 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 C11orf71Q6IPW1 123 aa21.18■□□□□ 0.98
SHMT1-207ENST00000580002 VRK1Q99986 396 aaPredicted RBP21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms