RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 APOA1P02647 267 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 PGA5P0DJD9 388 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 GTF2F2P13984 249 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 IRF2P14316 349 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 SERPINA2P20848 420 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 ART1P52961 327 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 LRRC28Q86X40 367 aaPredicted RBP9.08□□□□□ -0.96
SS18-213ENST00000579640 ZCCHC24Q8N2G6 241 aaKnown RBP9.08□□□□□ -0.96
SS18-213ENST00000579640 SAMD12Q8N8I0 201 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 POC1AQ8NBT0 407 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 OR6Q1Q8NGQ2 317 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 OR5H6Q8NGV6 325 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 RAB40AQ8WXH6 277 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 WDFY2Q96P53 400 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 NRIP2Q9BQI9 281 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 URM1Q9BTM9 101 aaKnown RBP9.08□□□□□ -0.96
SS18-213ENST00000579640 TMEM59Q9BXS4 323 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 RHBDL2Q9NX52 303 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 RASL12Q9NYN1 266 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 PPP1R3CQ9UQK1 317 aa9.08□□□□□ -0.96
SS18-213ENST00000579640 IGHV3-64DA0A0J9YX35 117 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 METTL21EPA6NDL7 271 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 CTDSP2O14595 271 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 CDC14BO60729 498 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 CRTAPO75718 401 aaPredicted RBP9.07□□□□□ -0.96
SS18-213ENST00000579640 RHBDL1O75783 438 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 SCGNO76038 276 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 HTR3BO95264 441 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 MGMTP16455 207 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 BCL3P20749 454 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 FGF12P61328 243 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 ERVK11-1P61568 191 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 MRPS11P82912 194 aaKnown RBP9.07□□□□□ -0.96
SS18-213ENST00000579640 UNC119Q13432 240 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 SPRNQ5BIV9 151 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 FIP1L1Q6UN15 594 aaKnown RBP9.07□□□□□ -0.96
SS18-213ENST00000579640 ZNF826PQ6ZT77 177 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 C1orf87Q8N0U7 546 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 OSR2Q8N2R0 312 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 LRRC29Q8WV35 223 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 IGFBPL1Q8WX77 278 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 MARVELD3Q96A59 401 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 CCL19Q99731 98 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 ABCG5Q9H222 651 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 CXorf56Q9H5V9 222 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 RNF7Q9UBF6 113 aa9.07□□□□□ -0.96
SS18-213ENST00000579640 DSCAMO60469 2012 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 SRRM5B3KS81 715 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 OVOL3O00110 214 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 AKR7A2O43488 359 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 HPGDSO60760 199 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 MPIG6BO95866 241 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 SFTPBP07988 381 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 PMELP40967 661 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 RPS27AP62979 156 aaKnown RBP9.06□□□□□ -0.96
SS18-213ENST00000579640 NHLRC3Q5JS37 347 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 OR10K2Q6IF99 312 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 FAM90A1Q86YD7 464 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 FAM58AQ8N1B3 248 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 TMEM104Q8NE00 496 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 OR51T1Q8NGJ9 327 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 OR10K1Q8NGX5 313 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 FAM46BQ96A09 425 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 S100A16Q96FQ6 103 aaKnown RBP9.06□□□□□ -0.96
SS18-213ENST00000579640 TM2D1Q9BX74 207 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 MIXL1Q9H2W2 232 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 KCNK15Q9H427 330 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 HES4Q9HCC6 221 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 DLL4Q9NR61 685 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 EDARQ9UNE0 448 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 NPTNQ9Y639 398 aa9.06□□□□□ -0.96
SS18-213ENST00000579640 CHD3Q12873 2000 aaKnown RBP9.06□□□□□ -0.96
SS18-213ENST00000579640 A0A0A6YYH2 397 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 IGHV1-69-2A0A0G2JMI3 117 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM90A10PA6NDY2 464 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM90A18PA6NE21 464 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM90A16PA6NEW6 464 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM90A20PA6NIJ5 464 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 A6NJ64 397 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM90A8PA6NJQ4 464 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM90A7PA6NKC0 464 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM90A22PA8MWA6 464 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM90A12PA8MX19 464 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM90A5PA8MXJ8 464 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM90A23PA8MXZ1 464 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM25AB3EWG3 89 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM25CB3EWG5 89 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM25GB3EWG6 89 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 H3BUI4 141 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 NXPH2O95156 264 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 LHBP01229 141 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 HPXP02790 462 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 CHRM2P08172 466 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM90A15PP0C7V4 464 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM90A13PP0C7W8 464 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM90A14PP0C7W9 464 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 FAM90A24PP0C7X0 464 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 GLRA1P23415 457 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 CPT2P23786 658 aa9.05□□□□□ -0.96
SS18-213ENST00000579640 TALDO1P37837 337 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms