RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 GABARAPO95166 117 aa14.34□□□□□ -0.11
NUP88-210ENST00000574867 CD37P11049 281 aa14.34□□□□□ -0.11
NUP88-210ENST00000574867 MUC1P15941 1255 aaPredicted RBP14.34□□□□□ -0.11
NUP88-210ENST00000574867 CD80P33681 288 aa14.34□□□□□ -0.11
NUP88-210ENST00000574867 OR3A4PP47883 348 aa14.34□□□□□ -0.11
NUP88-210ENST00000574867 ERVK11-1P61568 191 aa14.34□□□□□ -0.11
NUP88-210ENST00000574867 MICBQ29980 383 aa14.34□□□□□ -0.11
NUP88-210ENST00000574867 WFDC11Q8NEX6 87 aa14.34□□□□□ -0.11
NUP88-210ENST00000574867 S100A13Q99584 98 aa14.34□□□□□ -0.11
NUP88-210ENST00000574867 CNTD2Q9H8S5 307 aa14.34□□□□□ -0.11
NUP88-210ENST00000574867 HES4Q9HCC6 221 aa14.34□□□□□ -0.11
NUP88-210ENST00000574867 DNAJB11Q9UBS4 358 aa14.34□□□□□ -0.11
NUP88-210ENST00000574867 SHISA3A0PJX4 238 aa14.33□□□□□ -0.12
NUP88-210ENST00000574867 RAB3BP20337 219 aa14.33□□□□□ -0.12
NUP88-210ENST00000574867 RBMXP38159 391 aaKnown RBP14.33□□□□□ -0.12
NUP88-210ENST00000574867 RANBP1P43487 201 aa14.33□□□□□ -0.12
NUP88-210ENST00000574867 ZNF404Q494X3 552 aa14.33□□□□□ -0.12
NUP88-210ENST00000574867 C1orf100Q5SVJ3 147 aa14.33□□□□□ -0.12
NUP88-210ENST00000574867 FAM201AQ5SY85 155 aa14.33□□□□□ -0.12
NUP88-210ENST00000574867 LRRC28Q86X40 367 aaPredicted RBP14.33□□□□□ -0.12
NUP88-210ENST00000574867 SPICQ8N5J4 248 aa14.33□□□□□ -0.12
NUP88-210ENST00000574867 AK6Q9Y3D8 172 aaKnown RBP14.33□□□□□ -0.12
NUP88-210ENST00000574867 V9GY05 133 aa14.33□□□□□ -0.12
NUP88-210ENST00000574867 CYSRT1A8MQ03 144 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 C3orf80F5H4A9 247 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 ANGPTL7O43827 346 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 BMXP51813 675 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 GPR107Q5VW38 600 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 ASCL4Q6XD76 172 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 SLC16A12Q6ZSM3 486 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 OR6M1Q8NGM8 313 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 ZNF488Q96MN9 340 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 WDR13Q9H1Z4 485 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 IL36GQ9NZH8 169 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 MRPS28Q9Y2Q9 187 aaKnown RBP14.32□□□□□ -0.12
NUP88-210ENST00000574867 IGKV1-12A0A0C4DH73 117 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 WNT9BO14905 357 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 ZNF780AO75290 641 aaPredicted RBP14.32□□□□□ -0.12
NUP88-210ENST00000574867 ZNF205O95201 554 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 IGKV1D-12P01611 117 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 AWAT2Q6E213 333 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 FIP1L1Q6UN15 594 aaKnown RBP14.32□□□□□ -0.12
NUP88-210ENST00000574867 ACP7Q6ZNF0 438 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 TBC1D15Q8TC07 691 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 GFI1Q99684 422 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 NKX3-1Q99801 234 aaPredicted RBP14.32□□□□□ -0.12
NUP88-210ENST00000574867 GAL3ST1Q99999 423 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 METTL9Q9H1A3 318 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 RNF167Q9H6Y7 350 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 TMEM165Q9HC07 324 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 PCDHB16Q9NRJ7 776 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 NLKQ9UBE8 527 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 GHRLQ9UBU3 117 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 MYO9AB2RTY4 2548 aa14.32□□□□□ -0.12
NUP88-210ENST00000574867 SLC17A2O00624 439 aa14.31□□□□□ -0.12
NUP88-210ENST00000574867 NDUFA2O43678 99 aa14.31□□□□□ -0.12
NUP88-210ENST00000574867 UBBP0CG47 229 aa14.31□□□□□ -0.12
NUP88-210ENST00000574867 BCL3P20749 454 aa14.31□□□□□ -0.12
NUP88-210ENST00000574867 CFPP27918 469 aa14.31□□□□□ -0.12
NUP88-210ENST00000574867 GMFBP60983 142 aa14.31□□□□□ -0.12
NUP88-210ENST00000574867 HOXA4Q00056 320 aaPredicted RBP14.31□□□□□ -0.12
NUP88-210ENST00000574867 GPR176Q14439 515 aa14.31□□□□□ -0.12
NUP88-210ENST00000574867 RSU1Q15404 277 aa14.31□□□□□ -0.12
NUP88-210ENST00000574867 SFRP4Q6FHJ7 346 aaPredicted RBP14.31□□□□□ -0.12
NUP88-210ENST00000574867 DCDC5Q6ZRR9 648 aa14.31□□□□□ -0.12
NUP88-210ENST00000574867 OR4D6Q8NGJ1 314 aa14.31□□□□□ -0.12
NUP88-210ENST00000574867 EMG1Q92979 244 aaKnown RBP14.31□□□□□ -0.12
NUP88-210ENST00000574867 ELL3Q9HB65 397 aaPredicted RBP14.31□□□□□ -0.12
NUP88-210ENST00000574867 PLGRKTQ9HBL7 147 aa14.31□□□□□ -0.12
NUP88-210ENST00000574867 SLC22A1O15245 554 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 USF1P22415 310 aaPredicted RBP14.3□□□□□ -0.12
NUP88-210ENST00000574867 CPT2P23786 658 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 HTR2CP28335 458 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 SDC2P34741 201 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 ELP2Q6IA86 826 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 FAM58AQ8N1B3 248 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 C19orf18Q8NEA5 215 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 BCL7BQ9BQE9 202 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 RBFOX1Q9NWB1 397 aaKnown RBP14.3□□□□□ -0.12
NUP88-210ENST00000574867 KNG1P01042 644 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 SFTPBP07988 381 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 NPBWR2P48146 333 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 LSM3P62310 102 aaKnown RBP14.3□□□□□ -0.12
NUP88-210ENST00000574867 DGUOKQ16854 277 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 STUMQ69YW2 141 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 GLIPR1L1Q6UWM5 242 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 C1QL2Q7Z5L3 287 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 CLVS1Q8IUQ0 354 aaPredicted RBP14.3□□□□□ -0.12
NUP88-210ENST00000574867 BATF2Q8N1L9 274 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 DEFB108BQ8NET1 73 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 Q8NFD4 153 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 RAB2BQ8WUD1 216 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 TMEM246Q9BRR3 403 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 REG4Q9BYZ8 158 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 NAA50Q9GZZ1 169 aaKnown RBP14.3□□□□□ -0.12
NUP88-210ENST00000574867 DNTTIP1Q9H147 329 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 ING4Q9UNL4 249 aa14.3□□□□□ -0.12
NUP88-210ENST00000574867 IGHV3OR15-7A0A075B7D8 119 aa14.29□□□□□ -0.12
NUP88-210ENST00000574867 A0A096LNT2 108 aa14.29□□□□□ -0.12
NUP88-210ENST00000574867 IGHV4-61A0A0C4DH41 118 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms