RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 DHRS11Q6UWP2 260 aa19.79■□□□□ 0.76
VPS53-211ENST00000571805 ADGRG7Q96K78 797 aa19.79■□□□□ 0.76
VPS53-211ENST00000571805 ALKBH3Q96Q83 286 aaPredicted RBP19.79■□□□□ 0.76
VPS53-211ENST00000571805 SULT4A1Q9BR01 284 aa19.79■□□□□ 0.76
VPS53-211ENST00000571805 AIFM2Q9BRQ8 373 aa19.79■□□□□ 0.76
VPS53-211ENST00000571805 ZNF629Q9UEG4 869 aaPredicted RBP19.79■□□□□ 0.76
VPS53-211ENST00000571805 PADI1Q9ULC6 663 aa19.79■□□□□ 0.76
VPS53-211ENST00000571805 PRELID1Q9Y255 219 aa19.79■□□□□ 0.76
VPS53-211ENST00000571805 ZNF705EA8MWA4 302 aaPredicted RBP19.79■□□□□ 0.76
VPS53-211ENST00000571805 RPL7L1Q6DKI1 246 aaKnown RBP19.79■□□□□ 0.76
VPS53-211ENST00000571805 AAED1Q7RTV5 226 aa19.79■□□□□ 0.76
VPS53-211ENST00000571805 PPP1R32Q7Z5V6 425 aa19.79■□□□□ 0.76
VPS53-211ENST00000571805 UBALD2Q8IYN6 164 aa19.79■□□□□ 0.76
VPS53-211ENST00000571805 FGFBP3Q8TAT2 258 aa19.79■□□□□ 0.76
VPS53-211ENST00000571805 TUBD1Q9UJT1 453 aa19.79■□□□□ 0.76
VPS53-211ENST00000571805 IGKV1-12A0A0C4DH73 117 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 TAAR5O14804 337 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 IGKV1D-12P01611 117 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 DTYMKP23919 212 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 LHFPL2Q6ZUX7 228 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 FOXRED2Q8IWF2 684 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 CPNE2Q96FN4 548 aaPredicted RBP19.78■□□□□ 0.76
VPS53-211ENST00000571805 SMIM8Q96KF7 97 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 CMSS1Q9BQ75 279 aaKnown RBP19.78■□□□□ 0.76
VPS53-211ENST00000571805 PURGQ9UJV8 347 aaKnown RBP19.78■□□□□ 0.76
VPS53-211ENST00000571805 LRRC3CA6NJW4 275 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 FCGR3AP08637 254 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 OPRM1P35372 400 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 HTR5AP47898 357 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 CLDN15P56746 228 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 RPS18P62269 152 aaKnown RBP19.78■□□□□ 0.76
VPS53-211ENST00000571805 ABLIM2Q6H8Q1 611 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 OR2A2Q6IF42 318 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 SVBPQ8N300 66 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 FNDC9Q8TBE3 224 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 BORCS8Q96FH0 119 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 WNT5BQ9H1J7 359 aa19.78■□□□□ 0.76
VPS53-211ENST00000571805 NRASP01111 189 aa19.77■□□□□ 0.76
VPS53-211ENST00000571805 RGS19P49795 217 aa19.77■□□□□ 0.76
VPS53-211ENST00000571805 PJVKQ0ZLH3 352 aa19.77■□□□□ 0.76
VPS53-211ENST00000571805 GGNBP1Q5YKI7 109 aa19.77■□□□□ 0.76
VPS53-211ENST00000571805 IL34Q6ZMJ4 242 aa19.77■□□□□ 0.76
VPS53-211ENST00000571805 MRPL24Q96A35 216 aaKnown RBP19.77■□□□□ 0.76
VPS53-211ENST00000571805 SAT2Q96F10 170 aaPredicted RBP19.77■□□□□ 0.76
VPS53-211ENST00000571805 FOXB1Q99853 325 aa19.77■□□□□ 0.76
VPS53-211ENST00000571805 NECAP2Q9NVZ3 263 aa19.77■□□□□ 0.76
VPS53-211ENST00000571805 CARHSP1Q9Y2V2 147 aaKnown RBP19.77■□□□□ 0.76
VPS53-211ENST00000571805 TIMM10BQ9Y5J6 103 aa19.77■□□□□ 0.76
VPS53-211ENST00000571805 WNT2BQ93097 391 aa19.77■□□□□ 0.75
VPS53-211ENST00000571805 OR2H1Q9GZK4 316 aa19.77■□□□□ 0.75
VPS53-211ENST00000571805 GEMIN2O14893 280 aaKnown RBP19.76■□□□□ 0.75
VPS53-211ENST00000571805 IGHEP01854 428 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 FAM3AP98173 230 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 CEACAM16Q2WEN9 425 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 ZNF528Q3MIS6 628 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 PIGYQ3MUY2 71 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 LDLRAD3Q86YD5 345 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 ZNF100Q8IYN0 542 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 OR10AD1Q8NGE0 317 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 OR10D3Q8NH80 312 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 OR2V1Q8NHB1 315 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 TAF9BQ9HBM6 251 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 hCG_38984A0A1B0GV85 526 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 ZNF850A8MQ14 1090 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 DEDDO75618 318 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 PDGFBP01127 241 aaPredicted RBP19.76■□□□□ 0.75
VPS53-211ENST00000571805 RCC1P18754 421 aaPredicted RBP19.76■□□□□ 0.75
VPS53-211ENST00000571805 RPL12P30050 165 aaKnown RBP19.76■□□□□ 0.75
VPS53-211ENST00000571805 WIPI1Q5MNZ9 446 aaPredicted RBP19.76■□□□□ 0.75
VPS53-211ENST00000571805 OR5T2Q8NGG2 359 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 DYRK2Q92630 601 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 MARS2Q96GW9 593 aaKnown RBP19.76■□□□□ 0.75
VPS53-211ENST00000571805 TLNRD1Q9H1K6 362 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 ZNF391Q9UJN7 358 aa19.76■□□□□ 0.75
VPS53-211ENST00000571805 LRP3O75074 770 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 ZNF205O95201 554 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 OTX2P32243 289 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 PIGPP57054 158 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 EIF5AP63241 154 aaKnown RBP19.75■□□□□ 0.75
VPS53-211ENST00000571805 ZNF92Q03936 586 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 RIPPLY2Q5TAB7 128 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 BRICD5Q6PL45 260 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 PCDHB16Q9NRJ7 776 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 DEPPQ9NTK1 212 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 F8W036 122 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 BLOC1S1P78537 153 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 H3F3CQ6NXT2 135 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 SKA3Q8IX90 412 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 OSR2Q8N2R0 312 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 ADAT1Q9BUB4 502 aaKnown RBP19.75■□□□□ 0.75
VPS53-211ENST00000571805 TMEM231Q9H6L2 316 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 GPR35Q9HC97 309 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 IL36GQ9NZH8 169 aa19.75■□□□□ 0.75
VPS53-211ENST00000571805 ARID1AO14497 2285 aa19.74■□□□□ 0.75
VPS53-211ENST00000571805 IFNA21P01568 189 aa19.74■□□□□ 0.75
VPS53-211ENST00000571805 H2AFB1P0C5Y9 115 aa19.74■□□□□ 0.75
VPS53-211ENST00000571805 ZNF728P0DKX0 622 aa19.74■□□□□ 0.75
VPS53-211ENST00000571805 ICAM2P13598 275 aa19.74■□□□□ 0.75
VPS53-211ENST00000571805 PDZK1IP1Q13113 114 aa19.74■□□□□ 0.75
VPS53-211ENST00000571805 TMEM268Q5VZI3 342 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms