RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 C9orf40Q8IXQ3 194 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 OR4D10Q8NGI6 311 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 CORO2AQ92828 525 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 PGLYRP3Q96LB9 341 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 WBP1LQ9NX94 342 aa13.6□□□□□ -0.23
CIITA-204ENST00000570546 SF3B6Q9Y3B4 125 aaKnown RBP13.6□□□□□ -0.23
CIITA-204ENST00000570546 AQP7P3A6NL99 342 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 TMEM33P57088 247 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 IFITM2Q01629 132 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 SURF2Q15527 256 aaPredicted RBP13.59□□□□□ -0.23
CIITA-204ENST00000570546 D2HGDHQ8N465 521 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 ADAD2Q8NCV1 583 aaKnown RBP13.59□□□□□ -0.23
CIITA-204ENST00000570546 OR5C1Q8NGR4 320 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 OR10D3Q8NH80 312 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 RASL12Q9NYN1 266 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 RNF133Q8WVZ7 376 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 ABCD4O14678 606 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 TNFSF15O95150 251 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 SUB1P53999 127 aaKnown RBP eCLIP13.59□□□□□ -0.23
CIITA-204ENST00000570546 PILRAQ9UKJ1 303 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 V9GYS6 101 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 RD3LP0DJH9 198 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 RAB13P51153 203 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 ZNF528Q3MIS6 628 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 ZNF718Q3SXZ3 478 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 SFTPA2Q8IWL1 248 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 ZNF721Q8TF20 911 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 SARGQ9BW04 601 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 SHARPINQ9H0F6 387 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 SLC35B3Q9H1N7 401 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 UCK1Q9HA47 277 aa13.59□□□□□ -0.23
CIITA-204ENST00000570546 C20orf202A1L168 122 aa13.58□□□□□ -0.23
CIITA-204ENST00000570546 TMEM218A2RU14 115 aa13.58□□□□□ -0.23
CIITA-204ENST00000570546 M0R1B8 84 aa13.58□□□□□ -0.23
CIITA-204ENST00000570546 PATE4P0C8F1 98 aa13.58□□□□□ -0.23
CIITA-204ENST00000570546 FABP6P51161 128 aa13.58□□□□□ -0.23
CIITA-204ENST00000570546 MICBQ29980 383 aa13.58□□□□□ -0.23
CIITA-204ENST00000570546 STPG2Q8N412 459 aa13.58□□□□□ -0.23
CIITA-204ENST00000570546 OR5M9Q8NGP3 310 aa13.58□□□□□ -0.23
CIITA-204ENST00000570546 PINX1Q96BK5 328 aaKnown RBP13.58□□□□□ -0.23
CIITA-204ENST00000570546 SARAFQ96BY9 339 aa13.58□□□□□ -0.23
CIITA-204ENST00000570546 SAT2Q96F10 170 aaPredicted RBP13.58□□□□□ -0.23
CIITA-204ENST00000570546 RYDENQ9NUL5 291 aaKnown RBP13.58□□□□□ -0.23
CIITA-204ENST00000570546 UQCC1Q9NVA1 299 aa13.58□□□□□ -0.23
CIITA-204ENST00000570546 ERRFI1Q9UJM3 462 aaPredicted RBP13.58□□□□□ -0.23
CIITA-204ENST00000570546 MED19A0JLT2 244 aaPredicted RBP13.58□□□□□ -0.24
CIITA-204ENST00000570546 TMEM30CPA0ZSE6 113 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 TOX3O15405 576 aaPredicted RBP13.58□□□□□ -0.24
CIITA-204ENST00000570546 ASAH2BP0C7U1 165 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 VSIG8P0DPA2 414 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 LSM6P62312 80 aaKnown RBP13.58□□□□□ -0.24
CIITA-204ENST00000570546 RTL8BQ17RB0 113 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 CLEC12BQ2HXU8 276 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 SPRED2Q7Z698 418 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 SLC26A10Q8NG04 563 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 S1PR3Q99500 378 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 CFHR5Q9BXR6 569 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 ZNF331Q9NQX6 463 aaPredicted RBP13.58□□□□□ -0.24
CIITA-204ENST00000570546 NPBWR1P48145 328 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 SMIM21Q3B7S5 101 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 Q8IYB0 196 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 OR2C3Q8N628 320 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 BOD1Q96IK1 185 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 GAR1Q9NY12 217 aaKnown RBP13.58□□□□□ -0.24
CIITA-204ENST00000570546 ANXA10Q9UJ72 324 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 ZNF236Q9UL36 1845 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 OR10J4P0C629 311 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 VSIG10L2P0DP72 767 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 EPHA8P29322 1005 aaPredicted RBP13.58□□□□□ -0.24
CIITA-204ENST00000570546 GABRA4P48169 554 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 SNRPEP62304 92 aaKnown RBP13.58□□□□□ -0.24
CIITA-204ENST00000570546 VASH2Q86V25 355 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 LURAP1Q96LR2 239 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 RASL10BQ96S79 203 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 ADAT1Q9BUB4 502 aaKnown RBP13.58□□□□□ -0.24
CIITA-204ENST00000570546 KLK13Q9UKR3 277 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 VSIG4Q9Y279 399 aa13.58□□□□□ -0.24
CIITA-204ENST00000570546 WDR74Q6RFH5 385 aaPredicted RBP13.57□□□□□ -0.24
CIITA-204ENST00000570546 OR8U1Q8NH10 309 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 PLA2G3Q9NZ20 509 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 A0A1W2PPQ1 181 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 CXCL2P19875 107 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 S100A7P31151 101 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 SRD5A2P31213 254 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 PRSS12P56730 875 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 MOB1BQ7L9L4 216 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 FAM58AQ8N1B3 248 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 DEFB108BQ8NET1 73 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 CMTM2Q8TAZ6 248 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 MITD1Q8WV92 249 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 EDARADDQ8WWZ3 215 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 RAB40CQ96S21 281 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 EGLN1Q9GZT9 426 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 P4HTMQ9NXG6 502 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 MRPS18BQ9Y676 258 aaKnown RBP13.57□□□□□ -0.24
CIITA-204ENST00000570546 WSB1Q9Y6I7 421 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 HLA-DQB1P01920 261 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 SLC25A4P12235 298 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 TAS2R45P59539 299 aa13.57□□□□□ -0.24
CIITA-204ENST00000570546 HABP2Q14520 560 aaPredicted RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms