RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 RNF7Q9UBF6 113 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 DUX4Q9UBX2 424 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 EDARQ9UNE0 448 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 NPTNQ9Y639 398 aa7.77□□□□□ -1.17
VPS35-211ENST00000569950 IGKV1D-17A0A075B6S4 117 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 IGHV3OR15-7A0A075B7D8 119 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 IFNL4K9M1U5 179 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 NDUFS8O00217 210 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 SLC22A1O15245 554 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 TPD52L2O43399 206 aaKnown RBP7.76□□□□□ -1.17
VPS35-211ENST00000569950 KDM4BO94953 1096 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 GABARAPO95166 117 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 CLEC2LP0C7M8 214 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 BCL3P20749 454 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 CALRP27797 417 aaKnown RBP7.76□□□□□ -1.17
VPS35-211ENST00000569950 ATP1B3P54709 279 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 BTG1P62324 171 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 QRFPP83859 136 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 HFEQ30201 348 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 ZNF404Q494X3 552 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 DDI2Q5TDH0 399 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 SHEQ5VZ18 495 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 STUMQ69YW2 141 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 ZNF841Q6ZN19 808 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 BIVMQ86UB2 503 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 ANKRD13BQ86YJ7 626 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 CDH26Q8IXH8 852 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 SAXO1Q8IYX7 474 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 BATF2Q8N1L9 274 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 FGFRL1Q8N441 504 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 PXT1Q8NFP0 134 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 CLDND2Q8NHS1 167 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 ANGPTL6Q8NI99 470 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 THRSPQ92748 146 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 SLAMF9Q96A28 289 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 C1orf159Q96HA4 380 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 HIST1H2AAQ96QV6 131 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 TMEM246Q9BRR3 403 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 KCNK15Q9H427 330 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 SNTG1Q9NSN8 517 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 RBFOX1Q9NWB1 397 aaKnown RBP7.76□□□□□ -1.17
VPS35-211ENST00000569950 CTSZQ9UBR2 303 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 SLC7A11Q9UPY5 501 aa7.76□□□□□ -1.17
VPS35-211ENST00000569950 AK6Q9Y3D8 172 aaKnown RBP7.76□□□□□ -1.17
VPS35-211ENST00000569950 A0A1W2PP11 408 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 A6NLC8 198 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 CLDN25C9JDP6 229 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 LGALS8O00214 317 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 LDLRAD4O15165 306 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 PPIHO43447 177 aaKnown RBP7.75□□□□□ -1.17
VPS35-211ENST00000569950 CDRT1O95170 752 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 PLATP00750 562 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 ERCC1P07992 297 aaPredicted RBP7.75□□□□□ -1.17
VPS35-211ENST00000569950 HCKP08631 526 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 CSF3P09919 207 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 SELLP14151 372 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 ZNF93P35789 620 aaPredicted RBP7.75□□□□□ -1.17
VPS35-211ENST00000569950 PTGFRP43088 359 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 GPR6P46095 362 aaPredicted RBP7.75□□□□□ -1.17
VPS35-211ENST00000569950 RPL5P46777 297 aaKnown RBP7.75□□□□□ -1.17
VPS35-211ENST00000569950 POU3F4P49335 361 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 CAV3P56539 151 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 DSCR9P59020 149 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 SEC61A1P61619 476 aaKnown RBP7.75□□□□□ -1.17
VPS35-211ENST00000569950 NCS1P62166 190 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 PPP3R1P63098 170 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 MZT1Q08AG7 82 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 PLA2G7Q13093 441 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 ATPAF1Q5TC12 328 aaPredicted RBP7.75□□□□□ -1.17
VPS35-211ENST00000569950 SFRP4Q6FHJ7 346 aaPredicted RBP7.75□□□□□ -1.17
VPS35-211ENST00000569950 ELP2Q6IA86 826 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 CLEC2AQ6UVW9 174 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 ACP7Q6ZNF0 438 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 GDPGP1Q6ZNW5 385 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 SATL1Q86VE3 508 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 CD177Q8N6Q3 437 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 ZSCAN4Q8NAM6 433 aaPredicted RBP7.75□□□□□ -1.17
VPS35-211ENST00000569950 MAPK1IP1LQ8NDC0 245 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 TMEM104Q8NE00 496 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 OR51F2Q8NH61 342 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 DACT3Q96B18 629 aaPredicted RBP7.75□□□□□ -1.17
VPS35-211ENST00000569950 REG4Q9BYZ8 158 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 CEPT1Q9Y6K0 416 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 FN1P02751 2386 aaKnown RBP7.75□□□□□ -1.17
VPS35-211ENST00000569950 KIAA2026Q5HYC2 2103 aa7.75□□□□□ -1.17
VPS35-211ENST00000569950 NIPBLQ6KC79 2804 aaeCLIP7.74□□□□□ -1.17
VPS35-211ENST00000569950 PPIAL4EA0A075B759 164 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 A0A0B4J203 849 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 LOC100506127A0A0U1RQW1 187 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 hCG_1807616A0A1W2PRN6 198 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 SMIM30A4D0T7 59 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 OOEPA6NGQ2 149 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 CEACAM18A8MTB9 384 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 KIAA1324LA8MWY0 1029 aaPredicted RBP7.74□□□□□ -1.17
VPS35-211ENST00000569950 FAM157AC9JC47 383 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 RNF223E7ERA6 249 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 PPIAL4DF5H284 164 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 SLC17A2O00624 439 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 AIREO43918 545 aa7.74□□□□□ -1.17
VPS35-211ENST00000569950 ARL6IP5O75915 188 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms