RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 CEP19Q96LK0 163 aa10.8□□□□□ -0.68
CLK3-224ENST00000568605 CCL13Q99616 98 aa10.8□□□□□ -0.68
CLK3-224ENST00000568605 NRIP2Q9BQI9 281 aa10.8□□□□□ -0.68
CLK3-224ENST00000568605 SMURF1Q9HCE7 757 aa10.8□□□□□ -0.68
CLK3-224ENST00000568605 MMP26Q9NRE1 261 aa10.8□□□□□ -0.68
CLK3-224ENST00000568605 FKBP14Q9NWM8 211 aa10.8□□□□□ -0.68
CLK3-224ENST00000568605 CLEC2DQ9UHP7 191 aa10.8□□□□□ -0.68
CLK3-224ENST00000568605 ZNF281Q9Y2X9 895 aa10.8□□□□□ -0.68
CLK3-224ENST00000568605 RRP15Q9Y3B9 282 aaKnown RBP10.8□□□□□ -0.68
CLK3-224ENST00000568605 KIR2DS1A0A191URI9 304 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 TNFRSF13BO14836 293 aaPredicted RBP10.79□□□□□ -0.68
CLK3-224ENST00000568605 SIGLEC5O15389 551 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 OGG1O15527 345 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 ALX3O95076 343 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 MT-ND2P03891 347 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 RAB3AP20336 220 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 EPHA1P21709 976 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 C21orf33P30042 268 aaPredicted RBP10.79□□□□□ -0.68
CLK3-224ENST00000568605 PPP3R1P63098 170 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 IKZF1Q13422 519 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 METTL11BQ5VVY1 283 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 RNLSQ5VYX0 342 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 XAF1Q6GPH4 301 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 SLC25A26Q70HW3 274 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 ANGPTL5Q86XS5 388 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 ZNF561Q8N587 486 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 TMEM185AQ8NFB2 350 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 OR5T2Q8NGG2 359 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 TMEM106AQ96A25 262 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 SEH1LQ96EE3 360 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 CNBD2Q96M20 576 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 DMRTB1Q96MA1 342 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 ZNF184Q99676 751 aaPredicted RBP10.79□□□□□ -0.68
CLK3-224ENST00000568605 HES4Q9HCC6 221 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 CKLFQ9UBR5 152 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 SLC25A10Q9UBX3 287 aaPredicted RBP10.79□□□□□ -0.68
CLK3-224ENST00000568605 PCDHGB5Q9Y5G0 923 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 MXRA5Q9NR99 2828 aa10.79□□□□□ -0.68
CLK3-224ENST00000568605 IGKV1-27A0A075B6S5 117 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 C22orf46C9J442 243 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 PTGES3LE9PB15 166 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 KNG1P01042 644 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 PSG2P11465 335 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 ADRA2CP18825 462 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 SOX2P48431 317 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 CAPZA1P52907 286 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 CAV3P56539 151 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 SLC35A2P78381 396 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 BDH1Q02338 343 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 PAX2Q02962 417 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 PAX8Q06710 450 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 Q499Y3 187 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 DMKNQ6E0U4 476 aaPredicted RBP10.78□□□□□ -0.68
CLK3-224ENST00000568605 BTN2A1Q7KYR7 527 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 CMTM4Q8IZR5 234 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 NANOGP1Q8N7R0 232 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 ZNF418Q8TF45 676 aaPredicted RBP10.78□□□□□ -0.68
CLK3-224ENST00000568605 H1FXQ92522 213 aaKnown RBP10.78□□□□□ -0.68
CLK3-224ENST00000568605 EMG1Q92979 244 aaKnown RBP10.78□□□□□ -0.68
CLK3-224ENST00000568605 SLAMF9Q96A28 289 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 DACT3Q96B18 629 aaPredicted RBP10.78□□□□□ -0.68
CLK3-224ENST00000568605 SDSLQ96GA7 329 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 ZNF488Q96MN9 340 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 GAFA1Q96PS6 74 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 OR14J1Q9UGF5 321 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 RPUSD1Q9UJJ7 312 aaKnown RBP10.78□□□□□ -0.68
CLK3-224ENST00000568605 ZNF222Q9UK12 451 aa10.78□□□□□ -0.68
CLK3-224ENST00000568605 IGKV1D-17A0A075B6S4 117 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 TRBV23-1A0A0A0MS06 115 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 IGKV1-9A0A0C4DH69 117 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 RFPL4AA6NLU0 287 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 ZNF879B4DU55 563 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 RFPL4AL1F8VTS6 287 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 RGS10O43665 173 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 TCF21O43680 179 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 LALBAP00709 142 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 AVPP01185 164 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 NDUFB7P17568 137 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 FPR2P25090 351 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 MAPK3P27361 379 aaPredicted RBP10.77□□□□□ -0.69
CLK3-224ENST00000568605 RBM48Q5RL73 367 aaKnown RBP10.77□□□□□ -0.69
CLK3-224ENST00000568605 PRIMA1Q86XR5 153 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 BPIFB2Q8N4F0 458 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 ZFP41Q8N8Y5 198 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 ZNF485Q8NCK3 441 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 RGP1Q92546 391 aaPredicted RBP10.77□□□□□ -0.69
CLK3-224ENST00000568605 GHSRQ92847 366 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 UPRTQ96BW1 309 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 GPER1Q99527 375 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 CDCA4Q9BXL8 241 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 RASSF4Q9H2L5 321 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 OCEL1Q9H607 264 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 RHOFQ9HBH0 211 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 OPN4Q9UHM6 478 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 GLS2Q9UI32 602 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 NUP50Q9UKX7 468 aa10.77□□□□□ -0.69
CLK3-224ENST00000568605 TRAV40A0A0B4J280 105 aa10.76□□□□□ -0.69
CLK3-224ENST00000568605 PNMA8CA0A1B0GUJ8 204 aa10.76□□□□□ -0.69
CLK3-224ENST00000568605 A0A1B0GW55 424 aa10.76□□□□□ -0.69
CLK3-224ENST00000568605 A0A1W2PPH5 198 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms