RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 SRSF10O75494 262 aaKnown RBP12.09□□□□□ -0.47
CLN3-236ENST00000568558 VSIG10L2P0DP72 767 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 EPHA2P29317 976 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 LGALS4P56470 323 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 ERVFRD-1P60508 538 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 TMEM42Q69YG0 159 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 ZNF573Q86YE8 665 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 DTX3Q8N9I9 347 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 OR4M1Q8NGD0 313 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 ASB17Q8WXJ9 295 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 NRIP2Q9BQI9 281 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 GABARAPL1Q9H0R8 117 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 GPR173Q9NS66 373 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 IKZF2Q9UKS7 526 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 POLDIP2Q9Y2S7 368 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 FAM90A8PA6NJQ4 464 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 SAC3D1A6NKF1 404 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 VGLL3A8MV65 326 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 M0R129 80 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 NXPH2O95156 264 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 TK1P04183 234 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 FCGR1AP12314 374 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 MPZP25189 248 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 CRISP1P54107 249 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 FBLN7Q53RD9 439 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 CLVS2Q5SYC1 327 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 ZNF782Q6ZMW2 699 aaPredicted RBP12.08□□□□□ -0.48
CLN3-236ENST00000568558 LHFPL4Q7Z7J7 247 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 CALHM1Q8IU99 346 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 ZDHHC13Q8IUH4 622 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 BATF2Q8N1L9 274 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 DYNAPQ8N1N2 210 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 CNN2Q99439 309 aaKnown RBP12.08□□□□□ -0.48
CLN3-236ENST00000568558 NKX3-1Q99801 234 aaPredicted RBP12.08□□□□□ -0.48
CLN3-236ENST00000568558 MOB1AQ9H8S9 216 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 ZNF702PQ9H963 129 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 HES4Q9HCC6 221 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 OR14J1Q9UGF5 321 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 OAZ3Q9UMX2 235 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 GTF2A1LQ9UNN4 478 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 V9GYS6 101 aa12.08□□□□□ -0.48
CLN3-236ENST00000568558 PQLC2LA1A4F0 135 aa12.07□□□□□ -0.48
CLN3-236ENST00000568558 C17orf98A8MV24 154 aa12.07□□□□□ -0.48
CLN3-236ENST00000568558 LOC110117498-PIK3R3F6TDL0 507 aa12.07□□□□□ -0.48
CLN3-236ENST00000568558 DLGAP1O14490 977 aa12.07□□□□□ -0.48
CLN3-236ENST00000568558 PIPP12273 146 aaPredicted RBP12.07□□□□□ -0.48
CLN3-236ENST00000568558 DLX6P56179 175 aa12.07□□□□□ -0.48
CLN3-236ENST00000568558 KDM4DQ6B0I6 523 aa12.07□□□□□ -0.48
CLN3-236ENST00000568558 ZNF322Q6U7Q0 402 aaPredicted RBP12.07□□□□□ -0.48
CLN3-236ENST00000568558 ELMOD2Q8IZ81 293 aa12.07□□□□□ -0.48
CLN3-236ENST00000568558 OR14K1Q8NGZ2 314 aa12.07□□□□□ -0.48
CLN3-236ENST00000568558 DNAJC9Q8WXX5 260 aa12.07□□□□□ -0.48
CLN3-236ENST00000568558 CENPNQ96H22 339 aaPredicted RBP12.07□□□□□ -0.48
CLN3-236ENST00000568558 CIB1Q99828 191 aa12.07□□□□□ -0.48
CLN3-236ENST00000568558 KRT84Q9NSB2 600 aa12.07□□□□□ -0.48
CLN3-236ENST00000568558 SERTAD4Q9NUC0 356 aa12.07□□□□□ -0.48
CLN3-236ENST00000568558 TCF19Q9Y242 345 aa12.07□□□□□ -0.48
CLN3-236ENST00000568558 TBL2Q9Y4P3 447 aaKnown RBP12.07□□□□□ -0.48
CLN3-236ENST00000568558 R4GMQ9 66 aa12.07□□□□□ -0.48
CLN3-236ENST00000568558 NOTCH3Q9UM47 2321 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 A0A1B0GTI1 187 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 DHRS7CA6NNS2 312 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 ODF3BA8MYP8 253 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 MAGEB4O15481 346 aaPredicted RBP12.06□□□□□ -0.48
CLN3-236ENST00000568558 PRKYO43930 277 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 FBXO24O75426 580 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 PRB2P02812 416 aaPredicted RBP12.06□□□□□ -0.48
CLN3-236ENST00000568558 POLR2IP36954 125 aaKnown RBP12.06□□□□□ -0.48
CLN3-236ENST00000568558 CXCR4P61073 352 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 ERVK11-1P61568 191 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 ESRRGP62508 458 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 HABP2Q14520 560 aaPredicted RBP12.06□□□□□ -0.48
CLN3-236ENST00000568558 PTGES3Q15185 160 aaKnown RBP12.06□□□□□ -0.48
CLN3-236ENST00000568558 PLA1AQ53H76 456 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 BCL2L15Q5TBC7 163 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 CCBE1Q6UXH8 406 aaPredicted RBP12.06□□□□□ -0.48
CLN3-236ENST00000568558 PLEKHG7Q6ZR37 379 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 Q6ZSR3 168 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 LYG1Q8N1E2 194 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 Q8N2B8 174 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 FOXRED1Q96CU9 486 aaPredicted RBP12.06□□□□□ -0.48
CLN3-236ENST00000568558 APOL4Q9BPW4 351 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 CDCA4Q9BXL8 241 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 PKIBQ9C010 78 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 OR52A1Q9UKL2 312 aa12.06□□□□□ -0.48
CLN3-236ENST00000568558 A6NDX4 124 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 A6NIN4 97 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 K7N7A8 449 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 RBP4P02753 201 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 ARG1P05089 322 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 RAB13P51153 203 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 COL10A1Q03692 680 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 IL24Q13007 206 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 FAM189A2Q15884 450 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 LDLRAD2Q5SZI1 272 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 ZNF626Q68DY1 528 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 Q6ZPA2 131 aa12.05□□□□□ -0.48
CLN3-236ENST00000568558 MEPCEQ7L2J0 689 aaKnown RBP12.05□□□□□ -0.48
CLN3-236ENST00000568558 BCDIN3DQ7Z5W3 292 aaKnown RBP12.05□□□□□ -0.48
CLN3-236ENST00000568558 ANGPTL5Q86XS5 388 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms