RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 OR5B3Q8NH48 314 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ZNRF4Q8WWF5 429 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 DNAJB3Q8WWF6 145 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 RXFP2Q8WXD0 754 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 PNPLA2Q96AD5 504 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 SLC25A46Q96AG3 418 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ANKRD9Q96BM1 317 aaPredicted RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 RAB39BQ96DA2 213 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 GALNT14Q96FL9 552 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ACY3Q96HD9 319 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 PYURFQ96I23 114 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 PRAC1Q96KF2 57 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 C12orf42Q96LP6 360 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 PKMYT1Q99640 499 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 RAB34Q9BZG1 259 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 GABARAPL1Q9H0R8 117 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ACTR8Q9H981 624 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 C6orf50Q9HD87 102 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 OR2S2Q9NQN1 319 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 TMEM100Q9NV29 134 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 UQCC1Q9NVA1 299 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 PLEKHJ1Q9NW61 149 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 MED29Q9NX70 200 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 DOK5Q9P104 306 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 NAT8Q9UHE5 227 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ZNF223Q9UK11 482 aaPredicted RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 MRPS28Q9Y2Q9 187 aaKnown RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 MEMO1Q9Y316 297 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 EXOSC1Q9Y3B2 195 aaKnown RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 RBM7Q9Y580 266 aaKnown RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 COL5A2P05997 1499 aaPredicted RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 PXDNQ92626 1479 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 ALS2Q96Q42 1657 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 MYO5AQ9Y4I1 1855 aaKnown RBP2.88□□□□□ -1.95
VPS35-203ENST00000562420 KIAA1551Q9HCM1 1747 aa2.88□□□□□ -1.95
VPS35-203ENST00000562420 KIAA1217Q5T5P2 1943 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 LAMB4A4D0S4 1761 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 SCN11AQ9UI33 1791 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 LRRC37A3O60309 1634 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 AHDC1Q5TGY3 1603 aaPredicted RBP2.87□□□□□ -1.95
VPS35-203ENST00000562420 SIPA1L1O43166 1804 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 LOC105371242A0A075B767 164 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 IGHV2OR16-5A0A0B4J2B6 119 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 A0A1B0GU03 582 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 A0A1B0GW64 132 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 A0A1W2PRD5 423 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 PRORSD1PA6NEY8 169 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 A8MVM7 634 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 HIDE1A8MVS5 230 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 C2CD4DB7Z1M9 353 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 ANKRD63C9JTQ0 380 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 E9PQ18 207 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 G3V4G9 280 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 H3BN98 237 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 HAS3O00219 553 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 CXCR6O00574 342 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 ARPC2O15144 300 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 PDE6DO43924 150 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 NME6O75414 186 aaPredicted RBP2.87□□□□□ -1.95
VPS35-203ENST00000562420 VAMP5O95183 116 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 ETHE1O95571 254 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 TMEM50AO95807 157 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 TCRBP04435 133 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 CSN2P05814 226 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 SMIM10L2AP0DMW4 78 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 SMIM10L2BP0DMW5 78 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 GZMBP10144 247 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 SLC25A4P12235 298 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 EPCAMP16422 314 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 KDELR2P33947 212 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 TGFBR1P36897 503 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 MDH2P40926 338 aaKnown RBP2.87□□□□□ -1.95
VPS35-203ENST00000562420 RBM34P42696 430 aaKnown RBP2.87□□□□□ -1.95
VPS35-203ENST00000562420 SLC6A8P48029 635 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 CSNK1A1P48729 337 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 UCNP55089 124 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 CLDN15P56746 228 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 FAM3AP98173 230 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 RUNX1Q01196 453 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 BAXQ07812 192 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 ZNF415Q09FC8 603 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 C2orf80Q0P641 193 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 TAF10Q12962 218 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 ZNF154Q13106 437 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 ITPK1Q13572 414 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 C1DQ13901 141 aaKnown RBP2.87□□□□□ -1.95
VPS35-203ENST00000562420 PDE7AQ13946 482 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 TMEM187Q14656 261 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 PRSS8Q16651 343 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 GSG1Q2KHT4 349 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 VWC2Q2TAL6 325 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 DCAF4L1Q3SXM0 396 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 PDZD11Q5EBL8 140 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 TMEM255AQ5JRV8 349 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 NCMAPQ5T1S8 102 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 LCE1FQ5T754 118 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 ZNF660Q6AZW8 331 aaPredicted RBP2.87□□□□□ -1.95
VPS35-203ENST00000562420 OR52W1Q6IF63 320 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 DNAJC24Q6P3W2 148 aa2.87□□□□□ -1.95
VPS35-203ENST00000562420 TMEM205Q6UW68 189 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms