RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 Q6ZTK2 550 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 ASRGL1Q7L266 308 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 ANGPTL5Q86XS5 388 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 ZNF573Q86YE8 665 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 DYNAPQ8N1N2 210 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 KLHDC1Q8N7A1 406 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 OR4C13Q8NGP0 309 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 OR14K1Q8NGZ2 314 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 OR2T27Q8NH04 317 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 CNN2Q99439 309 aaKnown RBP9.43□□□□□ -0.9
USP3-220ENST00000561381 NRIP2Q9BQI9 281 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 FAM234AQ9H0X4 552 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 HEXA-AS1Q9H8Q6 139 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 OR14J1Q9UGF5 321 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 SLC22A13Q9Y226 551 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 TMEM14AQ9Y6G1 99 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 H3BSH0 61 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 SLC1A7O00341 560 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 PLXNB1O43157 2135 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 NOS1APO75052 506 aaPredicted RBP9.42□□□□□ -0.9
USP3-220ENST00000561381 NXPH2O95156 264 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 PRB2P02812 416 aaPredicted RBP9.42□□□□□ -0.9
USP3-220ENST00000561381 TK1P04183 234 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 VSIG10L2P0DP72 767 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 RAB13P51153 203 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 DLX6P56179 175 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 HABP2Q14520 560 aaPredicted RBP9.42□□□□□ -0.9
USP3-220ENST00000561381 LDLRAD2Q5SZI1 272 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 MEPCEQ7L2J0 689 aaKnown RBP9.42□□□□□ -0.9
USP3-220ENST00000561381 SSX6Q7RTT6 188 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 CALHM1Q8IU99 346 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 SLC35F2Q8IXU6 374 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 ELMOD2Q8IZ81 293 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 LYG1Q8N1E2 194 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 TCEANCQ8N8B7 351 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 OR2T6Q8NHC8 308 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 TRMT10AQ8TBZ6 339 aaKnown RBP9.42□□□□□ -0.9
USP3-220ENST00000561381 CFHR4Q92496 578 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 ITFG2Q969R8 447 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 NKX3-1Q99801 234 aaPredicted RBP9.42□□□□□ -0.9
USP3-220ENST00000561381 ADGRL4Q9HBW9 690 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 HES4Q9HCC6 221 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 USE1Q9NZ43 259 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 MRM2Q9UI43 246 aaKnown RBP9.42□□□□□ -0.9
USP3-220ENST00000561381 OR52A1Q9UKL2 312 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 POMPQ9Y244 141 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 R4GMQ9 66 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 V9GYS6 101 aa9.42□□□□□ -0.9
USP3-220ENST00000561381 FAM90A8PA6NJQ4 464 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 F8VVB4 439 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 F8VWA3 439 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 DLGAP1O14490 977 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 GYG2O15488 501 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 OPN1MWP04001 364 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 OPN1MW2P0DN77 364 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 OPN1MW3P0DN78 364 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 MPZP25189 248 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 LGALS4P56470 323 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 ERVK11-1P61568 191 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 EFNB1P98172 346 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 AANATQ16613 207 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 ODF4Q2M2E3 257 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 BEAN1Q3B7T3 259 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 BCL2L15Q5TBC7 163 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 AADACL4Q5VUY2 407 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 CCBE1Q6UXH8 406 aaPredicted RBP9.41□□□□□ -0.9
USP3-220ENST00000561381 UTP4Q969X6 686 aaKnown RBP9.41□□□□□ -0.9
USP3-220ENST00000561381 SLC7A6OSQ96CW6 309 aaPredicted RBP9.41□□□□□ -0.9
USP3-220ENST00000561381 NRBF2Q96F24 287 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 IL4I1Q96RQ9 567 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 NPFFR1Q9GZQ6 430 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 RANBP3Q9H6Z4 567 aaPredicted RBP9.41□□□□□ -0.9
USP3-220ENST00000561381 ZNF702PQ9H963 129 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 POLDIP2Q9Y2S7 368 aa9.41□□□□□ -0.9
USP3-220ENST00000561381 IGKV1-27A0A075B6S5 117 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 A0A1W2PPH5 198 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 FAM230AA0A1W2PPH8 454 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 C17orf98A8MV24 154 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 ZNF670-ZNF695F2Z2N8 137 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 K7N7A8 449 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 INMTO95050 263 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 RPP14O95059 124 aaKnown RBP9.4□□□□□ -0.9
USP3-220ENST00000561381 APOL3O95236 402 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 IGHA1P01876 353 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 JUNBP17275 347 aaPredicted RBP9.4□□□□□ -0.9
USP3-220ENST00000561381 HOXB6P17509 224 aaKnown RBP9.4□□□□□ -0.9
USP3-220ENST00000561381 COL10A1Q03692 680 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 SLX4IPQ5VYV7 408 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 Q6ZSR3 168 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 TCF23Q7RTU1 214 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 TMEM219Q86XT9 240 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 ASCC1Q8N9N2 400 aaKnown RBP9.4□□□□□ -0.9
USP3-220ENST00000561381 TMEM163Q8TC26 289 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 DNAJC9Q8WXX5 260 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 TBX5Q99593 518 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 MOB1AQ9H8S9 216 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 RAB18Q9NP72 206 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 CLN6Q9NWW5 311 aa9.4□□□□□ -0.9
USP3-220ENST00000561381 H2AFY2Q9P0M6 372 aaPredicted RBP9.4□□□□□ -0.9
USP3-220ENST00000561381 SNX5Q9Y5X3 404 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms