RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 CHST11Q9NPF2 352 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 PCDHB16Q9NRJ7 776 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 CYTL1Q9NRR1 136 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 STARD5Q9NSY2 213 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 ASF1BQ9NVP2 202 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 HPF1Q9NWY4 346 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 SLC39A1Q9NY26 324 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 COA4Q9NYJ1 87 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 SEMA5BQ9P283 1151 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 DNAJB11Q9UBS4 358 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 CTSFQ9UBX1 484 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 ZNF629Q9UEG4 869 aaPredicted RBP2.14□□□□□ -2.07
SPG11-223ENST00000560858 OR52A1Q9UKL2 312 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 RAB22AQ9UL26 194 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 OSGIN2Q9Y236 505 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 TMED7Q9Y3B3 224 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 FLVCR1Q9Y5Y0 555 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 POMT1Q9Y6A1 747 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 NCKAP5O14513 1909 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 SPAG17Q6Q759 2223 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 KMT2EQ8IZD2 1858 aa2.14□□□□□ -2.07
SPG11-223ENST00000560858 CHD7Q9P2D1 2997 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 SEC16AO15027 2179 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 IGLV3-12A0A075B6K2 115 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 IGLV3-32A0A0A0MS00 114 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 TNFSF12-TNFSF13A0A0A6YY99 330 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 IGHV5-51A0A0C4DH38 117 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 TMEM269A0A1B0GVZ9 245 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 A0A1W2PPC4 97 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 A0A1W2PR77 199 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 TCRBV21S2A2A0A5A6 115 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 OR2W5A6NFC9 320 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 EPOPA6NHQ4 379 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 MSGN1A6NI15 193 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 LIPT2A6NK58 231 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 C17orf51A8MQB3 221 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 NPIPA5E9PKD4 350 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 F5H0A9 414 aaPredicted RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 MS4A18H0YCH9 400 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 H3BSH0 61 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 H7C2Y5 167 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 P2RY10O00398 339 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 SIGLEC5O15389 551 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 NUPL2O15504 423 aaKnown RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 RRP8O43159 456 aaKnown RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 ZNF208O43345 1280 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 TRAF3IP2O43734 574 aaPredicted RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 OR6A2O95222 327 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 SNAPINO95295 136 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 IGLV2-11P01706 119 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 HLA-DQA2P01906 255 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 CSTBP04080 98 aaKnown RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 IFNA4P05014 189 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 CSN2P05814 226 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 ERCC1P07992 297 aaPredicted RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 H2BFMP0C1H6 154 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 SMIM6P0DI80 62 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 PGA4P0DJD7 388 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 PGA3P0DJD8 388 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 THEGLP0DJG4 465 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 LIPCP11150 499 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 HLA-DOBP13765 273 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 GLULP15104 373 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 PGAM2P15259 253 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 PRKACAP17612 351 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 PVALBP20472 110 aaPredicted RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 IL11P20809 199 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 PSMB6P28072 239 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 OTX1P32242 354 aaPredicted RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 PTGER4P35408 488 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 SERPINF1P36955 418 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 APOBEC1P41238 236 aaKnown RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 NPBWR1P48145 328 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 CSNK1EP49674 416 aaKnown RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 SULT1A2P50226 295 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 RAB13P51153 203 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 P2RY4P51582 365 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 CAV2P51636 162 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 NR0B1P51843 470 aaKnown RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 ZNF133P52736 654 aaPredicted RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 SUCLG1P53597 346 aaKnown RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 GFERP55789 205 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 UCP2P55851 309 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 TAS2R46P59540 309 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 EIF5AP63241 154 aaKnown RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 SUPT4H1P63272 117 aaKnown RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 DEFA5Q01523 94 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 FMODQ06828 376 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 SIGLEC14Q08ET2 396 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 FOXF1Q12946 379 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 RBM39Q14498 530 aaKnown RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 ATXN7L3Q14CW9 347 aaPredicted RBP2.13□□□□□ -2.07
SPG11-223ENST00000560858 PPA1Q15181 289 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 FAM189A2Q15884 450 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 GUCA2BQ16661 112 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 ODF4Q2M2E3 257 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 MS4A18Q3C1V0 323 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 ANKRD55Q3KP44 614 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 CDNFQ49AH0 187 aa2.13□□□□□ -2.07
SPG11-223ENST00000560858 LRRC37A5PQ49AS3 106 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms