RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 INMT-MINDY4F8WBC2 141 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 GEMIN2O14893 280 aaKnown RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 ARPC1BO15143 372 aaKnown RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 TUSC2O75896 110 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 IGHA1P01876 353 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 ACKR3P25106 362 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 SERPINF1P36955 418 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 EIF2B2P49770 351 aaKnown RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 SSX9Q7RTT3 188 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 OSR2Q8N2R0 312 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 GVQW1Q8N7I0 195 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 ADPRHL1Q8NDY3 354 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 MRGPRDQ8TDS7 321 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 SLC25A46Q96AG3 418 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 FOXRED1Q96CU9 486 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 BOD1Q96IK1 185 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 CCL13Q99616 98 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 HDHD3Q9BSH5 251 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 DPAGT1Q9H3H5 408 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 B3GNT2Q9NY97 397 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 HAO2Q9NYQ3 351 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 UBE2J1Q9Y385 318 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 ASPMQ8IZT6 3477 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 PRRC2AP48634 2157 aaKnown RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 CFAP47Q6ZTR5 3102 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 DISC1C4P0D8 188 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 SOCS1O15524 211 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 MRPS14O60783 128 aaKnown RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 GYPAP02724 150 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 RAC2P15153 192 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 RPS2P15880 293 aaKnown RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 BCL3P20749 454 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 ASCL1P50553 236 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 MMP16P51512 607 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 FUT6P51993 359 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 EFNB2P52799 333 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 LGALS4P56470 323 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 PYHIN1Q6K0P9 492 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 DEGS2Q6QHC5 323 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 CCBE1Q6UXH8 406 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 FBXW12Q6X9E4 464 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 TPRA1Q86W33 373 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 TMEM104Q8NE00 496 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 OR6F1Q8NGZ6 308 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 HAVCR2Q8TDQ0 301 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 ACOT12Q8WYK0 555 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 PP6455Q8WZ26 134 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 BCL2L2Q92843 193 aaPredicted RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 YIPF6Q96EC8 236 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 SLC22A4Q9H015 551 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 BCO1Q9HAY6 547 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 SLC17A5Q9NRA2 495 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 PURGQ9UJV8 347 aaKnown RBP4.7□□□□□ -1.66
VPS13C-209ENST00000560637 A3GALT2U3KPV4 340 aa4.7□□□□□ -1.66
VPS13C-209ENST00000560637 NKX6-3A6NJ46 265 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 ERVH48-1M5A8F1 160 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 AIPO00170 330 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 HSD17B6O14756 317 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 CCNKO75909 580 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 HOXD4P09016 255 aaPredicted RBP4.69□□□□□ -1.66
VPS13C-209ENST00000560637 HOXB5P09067 269 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 GSTP1P09211 210 aaKnown RBP4.69□□□□□ -1.66
VPS13C-209ENST00000560637 IL7P13232 177 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 CBR1P16152 277 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 DCTDP32321 178 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 DDOSTP39656 456 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 NPBWR2P48146 333 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 TAS2R20P59543 309 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 H3F3AP84243 136 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 MZT1Q08AG7 82 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 PSG7Q13046 419 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 BEX5Q5H9J7 111 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 LRRC28Q86X40 367 aaPredicted RBP4.69□□□□□ -1.66
VPS13C-209ENST00000560637 C1orf87Q8N0U7 546 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 FAM58AQ8N1B3 248 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 NKAIN3Q8N8D7 197 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 OR10S1Q8NGN2 331 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 ADGRG7Q96K78 797 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 NMNAT2Q9BZQ4 307 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 SH2D2AQ9NP31 389 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 KIF25Q9UIL4 384 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 ST6GALNAC2Q9UJ37 374 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 MEMO1Q9Y316 297 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 IGHV2OR16-5A0A0B4J2B6 119 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 SH2D1BO14796 132 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 LYRM1O43325 122 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 ORC5O43913 435 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 RHBDL1O75783 438 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 ACTL6BO94805 426 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 JUNBP17275 347 aaPredicted RBP4.69□□□□□ -1.66
VPS13C-209ENST00000560637 FAM189A2Q15884 450 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 TIMM23BQ5SRD1 257 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 C17orf107Q6ZR85 190 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 SLC16A12Q6ZSM3 486 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 CROCCP3Q8IVE0 287 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 Q8NA96 180 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 GTF3AQ92664 365 aaKnown RBP4.69□□□□□ -1.66
VPS13C-209ENST00000560637 NRGNQ92686 78 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 TMEM54Q969K7 222 aa4.69□□□□□ -1.66
VPS13C-209ENST00000560637 ARL11Q969Q4 196 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms