RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 ESCO2Q56NI9 601 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 SFRP4Q6FHJ7 346 aaPredicted RBP8.45□□□□□ -1.06
USP3-216ENST00000559873 ASPHD2Q6ICH7 369 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 CD200R1LQ6Q8B3 271 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 SLC36A1Q7Z2H8 476 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 ANGPTL5Q86XS5 388 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 DEFB108BQ8NET1 73 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 PXT1Q8NFP0 134 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 OR8B3Q8NGG8 313 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 OR52N4Q8NGI2 321 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 OR5D18Q8NGL1 313 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 EMG1Q92979 244 aaKnown RBP8.45□□□□□ -1.06
USP3-216ENST00000559873 SLAMF9Q96A28 289 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 RFT1Q96AA3 541 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 OR8B2Q96RD0 313 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 UQCC2Q9BRT2 126 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 ZNF665Q9H7R5 613 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 TMEM165Q9HC07 324 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 GLS2Q9UI32 602 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 OTOGQ6ZRI0 2925 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 AKAP9Q99996 3911 aa8.45□□□□□ -1.06
USP3-216ENST00000559873 A0A096LNT2 108 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 OR2AT4A6NND4 320 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 PIN1P1O15428 100 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 ADAM20O43506 726 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 SPRY1O43609 319 aaPredicted RBP8.44□□□□□ -1.06
USP3-216ENST00000559873 SYNGR1O43759 233 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 KDM4BO94953 1096 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 ZNF205O95201 554 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 IGHV2-5P01817 119 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 CSTBP04080 98 aaKnown RBP8.44□□□□□ -1.06
USP3-216ENST00000559873 INHBBP09529 407 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 UBBP0CG47 229 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 FGF9P31371 208 aaPredicted RBP8.44□□□□□ -1.06
USP3-216ENST00000559873 MTNR1BP49286 362 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 NPY4RP50391 375 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 ZP1P60852 638 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 GPR176Q14439 515 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 INSL4Q14641 139 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 RSU1Q15404 277 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 TMEM249Q2WGJ8 235 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 SPIN3Q5JUX0 258 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 FAM27D1Q5T7N8 215 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 AWAT2Q6E213 333 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 ACP7Q6ZNF0 438 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 TMEM91Q6ZNR0 172 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 GDPGP1Q6ZNW5 385 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 ORAI1Q96D31 301 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 NEIL1Q96FI4 390 aaPredicted RBP8.44□□□□□ -1.06
USP3-216ENST00000559873 KCTD7Q96MP8 289 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 SPACA5Q96QH8 159 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 TMEM246Q9BRR3 403 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 TMUB1Q9BVT8 246 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 METTL9Q9H1A3 318 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 ELL3Q9HB65 397 aaPredicted RBP8.44□□□□□ -1.06
USP3-216ENST00000559873 PATZ1Q9HBE1 687 aaKnown RBP8.44□□□□□ -1.06
USP3-216ENST00000559873 HES4Q9HCC6 221 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 GHRLQ9UBU3 117 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 SCOCQ9UIL1 159 aa8.44□□□□□ -1.06
USP3-216ENST00000559873 ACANP16112 2415 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 IGHV3OR15-7A0A075B7D8 119 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 TRAV1-2A0A0B4J238 106 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 LOC100506127A0A0U1RQW1 187 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 B4DSR2 109 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 TMPRSS2O15393 492 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 ANGPTL7O43827 346 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 FOXH1O75593 365 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 KNG1P01042 644 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 PTGFRP43088 359 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 OR3A4PP47883 348 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 PITPNBP48739 271 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 CAPZA1P52907 286 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 ERVK11-1P61568 191 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 IL13RA1P78552 427 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 FAM201AQ5SY85 155 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 STUMQ69YW2 141 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 C22orf42Q6IC83 251 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 GPR141Q7Z602 305 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 BIVMQ86UB2 503 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 FAM58AQ8N1B3 248 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 C19orf18Q8NEA5 215 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 OR6M1Q8NGM8 313 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 OR13F1Q8NGS4 319 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 MED30Q96HR3 178 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 ZNF488Q96MN9 340 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 CHCHD6Q9BRQ6 235 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 SSBP3Q9BWW4 388 aaPredicted RBP8.43□□□□□ -1.06
USP3-216ENST00000559873 CST11Q9H112 138 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 WDR13Q9H1Z4 485 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 PLGRKTQ9HBL7 147 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 TXNL4BQ9NX01 149 aaKnown RBP8.43□□□□□ -1.06
USP3-216ENST00000559873 IL36GQ9NZH8 169 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 MTCH1Q9NZJ7 389 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 KAAG1Q9UBP8 84 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 CLN8Q9UBY8 286 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 OR5V1Q9UGF6 321 aa8.43□□□□□ -1.06
USP3-216ENST00000559873 MRPS28Q9Y2Q9 187 aaKnown RBP8.43□□□□□ -1.06
USP3-216ENST00000559873 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.42□□□□□ -1.061e-6■■■■□ 20.8
USP3-216ENST00000559873 TLN2Q9Y4G6 2542 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 A8MXK9 166 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms