RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 ANGPTL5Q86XS5 388 aa9.43□□□□□ -0.9
USP3-214ENST00000559718 ZNF573Q86YE8 665 aa9.43□□□□□ -0.9
USP3-214ENST00000559718 DYNAPQ8N1N2 210 aa9.43□□□□□ -0.9
USP3-214ENST00000559718 KLHDC1Q8N7A1 406 aa9.43□□□□□ -0.9
USP3-214ENST00000559718 OR4C13Q8NGP0 309 aa9.43□□□□□ -0.9
USP3-214ENST00000559718 OR14K1Q8NGZ2 314 aa9.43□□□□□ -0.9
USP3-214ENST00000559718 OR2T27Q8NH04 317 aa9.43□□□□□ -0.9
USP3-214ENST00000559718 CNN2Q99439 309 aaKnown RBP9.43□□□□□ -0.9
USP3-214ENST00000559718 NRIP2Q9BQI9 281 aa9.43□□□□□ -0.9
USP3-214ENST00000559718 FAM234AQ9H0X4 552 aa9.43□□□□□ -0.9
USP3-214ENST00000559718 HEXA-AS1Q9H8Q6 139 aa9.43□□□□□ -0.9
USP3-214ENST00000559718 OR14J1Q9UGF5 321 aa9.43□□□□□ -0.9
USP3-214ENST00000559718 SLC22A13Q9Y226 551 aa9.43□□□□□ -0.9
USP3-214ENST00000559718 TMEM14AQ9Y6G1 99 aa9.43□□□□□ -0.9
USP3-214ENST00000559718 H3BSH0 61 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 SLC1A7O00341 560 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 PLXNB1O43157 2135 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 NOS1APO75052 506 aaPredicted RBP9.42□□□□□ -0.9
USP3-214ENST00000559718 NXPH2O95156 264 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 PRB2P02812 416 aaPredicted RBP9.42□□□□□ -0.9
USP3-214ENST00000559718 TK1P04183 234 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 VSIG10L2P0DP72 767 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 RAB13P51153 203 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 DLX6P56179 175 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 HABP2Q14520 560 aaPredicted RBP9.42□□□□□ -0.9
USP3-214ENST00000559718 LDLRAD2Q5SZI1 272 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 MEPCEQ7L2J0 689 aaKnown RBP9.42□□□□□ -0.9
USP3-214ENST00000559718 SSX6Q7RTT6 188 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 CALHM1Q8IU99 346 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 SLC35F2Q8IXU6 374 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 ELMOD2Q8IZ81 293 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 LYG1Q8N1E2 194 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 TCEANCQ8N8B7 351 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 OR2T6Q8NHC8 308 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 TRMT10AQ8TBZ6 339 aaKnown RBP9.42□□□□□ -0.9
USP3-214ENST00000559718 CFHR4Q92496 578 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 ITFG2Q969R8 447 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 NKX3-1Q99801 234 aaPredicted RBP9.42□□□□□ -0.9
USP3-214ENST00000559718 ADGRL4Q9HBW9 690 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 HES4Q9HCC6 221 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 USE1Q9NZ43 259 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 MRM2Q9UI43 246 aaKnown RBP9.42□□□□□ -0.9
USP3-214ENST00000559718 OR52A1Q9UKL2 312 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 POMPQ9Y244 141 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 R4GMQ9 66 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 V9GYS6 101 aa9.42□□□□□ -0.9
USP3-214ENST00000559718 FAM90A8PA6NJQ4 464 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 F8VVB4 439 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 F8VWA3 439 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 DLGAP1O14490 977 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 GYG2O15488 501 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 OPN1MWP04001 364 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 OPN1MW2P0DN77 364 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 OPN1MW3P0DN78 364 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 MPZP25189 248 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 LGALS4P56470 323 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 ERVK11-1P61568 191 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 EFNB1P98172 346 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 AANATQ16613 207 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 ODF4Q2M2E3 257 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 BEAN1Q3B7T3 259 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 BCL2L15Q5TBC7 163 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 AADACL4Q5VUY2 407 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 CCBE1Q6UXH8 406 aaPredicted RBP9.41□□□□□ -0.9
USP3-214ENST00000559718 UTP4Q969X6 686 aaKnown RBP9.41□□□□□ -0.9
USP3-214ENST00000559718 SLC7A6OSQ96CW6 309 aaPredicted RBP9.41□□□□□ -0.9
USP3-214ENST00000559718 NRBF2Q96F24 287 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 IL4I1Q96RQ9 567 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 NPFFR1Q9GZQ6 430 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 RANBP3Q9H6Z4 567 aaPredicted RBP9.41□□□□□ -0.9
USP3-214ENST00000559718 ZNF702PQ9H963 129 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 POLDIP2Q9Y2S7 368 aa9.41□□□□□ -0.9
USP3-214ENST00000559718 IGKV1-27A0A075B6S5 117 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 A0A1W2PPH5 198 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 FAM230AA0A1W2PPH8 454 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 C17orf98A8MV24 154 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 ZNF670-ZNF695F2Z2N8 137 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 K7N7A8 449 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 INMTO95050 263 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 RPP14O95059 124 aaKnown RBP9.4□□□□□ -0.9
USP3-214ENST00000559718 APOL3O95236 402 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 JUNBP17275 347 aaPredicted RBP9.4□□□□□ -0.9
USP3-214ENST00000559718 HOXB6P17509 224 aaKnown RBP9.4□□□□□ -0.9
USP3-214ENST00000559718 COL10A1Q03692 680 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 SLX4IPQ5VYV7 408 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 Q6ZSR3 168 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 TCF23Q7RTU1 214 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 TMEM219Q86XT9 240 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 ASCC1Q8N9N2 400 aaKnown RBP9.4□□□□□ -0.9
USP3-214ENST00000559718 TMEM163Q8TC26 289 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 DNAJC9Q8WXX5 260 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 TBX5Q99593 518 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 MOB1AQ9H8S9 216 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 RAB18Q9NP72 206 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 CLN6Q9NWW5 311 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 H2AFY2Q9P0M6 372 aaPredicted RBP9.4□□□□□ -0.9
USP3-214ENST00000559718 SNX5Q9Y5X3 404 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 NOTCH3Q9UM47 2321 aa9.4□□□□□ -0.9
USP3-214ENST00000559718 DSCAML1Q8TD84 2053 aa9.4□□□□□ -0.91
USP3-214ENST00000559718 hCG_1809904A0A1W2PP81 198 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms