RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 SERPINA5P05154 406 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 ERCC1P07992 297 aaPredicted RBP4.41□□□□□ -1.7
LDLR-209ENST00000558528 OCM2P0CE71 109 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 RNF224P0DH78 156 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 HKR1P10072 659 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 NR4A1P22736 598 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 GADD45AP24522 165 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 TGFBR2P37173 567 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 OPRL1P41146 370 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 HCCSP53701 268 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 UBE2NP61088 152 aaKnown RBP4.41□□□□□ -1.7
LDLR-209ENST00000558528 HIST1H3AP68431 136 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 FMODQ06828 376 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 RAB35Q15286 201 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 FAM189A2Q15884 450 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 SSX1Q16384 188 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 MAJINQ3KP22 176 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 Q499Y3 187 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 ACSM3Q53FZ2 586 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 HSD17B12Q53GQ0 312 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 BCL2L15Q5TBC7 163 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 HIST2H3PS2Q5TEC6 136 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 TSPO2Q5TGU0 170 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 LRRN1Q6UXK5 716 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 UNQ9370/PRO34162Q6UXP9 181 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 Q6ZT83 130 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 HIST2H3AQ71DI3 136 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 CEACAM19Q7Z692 300 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 ZNF283Q8N7M2 679 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 OR5L1Q8NGL2 311 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 OR5M9Q8NGP3 310 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 OR2G2Q8NGZ5 317 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 OR1F12Q8NHA8 337 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 RPS4Y2Q8TD47 263 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 SSC4DQ8WTU2 575 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 ZNF503Q96F45 646 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 CPNE2Q96FN4 548 aaPredicted RBP4.41□□□□□ -1.7
LDLR-209ENST00000558528 GFI1Q99684 422 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 SPAG8Q99932 426 aaPredicted RBP4.41□□□□□ -1.7
LDLR-209ENST00000558528 TMED9Q9BVK6 235 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 ZNF416Q9BWM5 594 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 NPFFR1Q9GZQ6 430 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 OR51E2Q9H255 320 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 SLC7A10Q9NS82 523 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 FAM212BQ9NTI7 297 aaPredicted RBP4.41□□□□□ -1.7
LDLR-209ENST00000558528 DDX28Q9NUL7 540 aaKnown RBP4.41□□□□□ -1.7
LDLR-209ENST00000558528 ACOXLQ9NUZ1 547 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 TXNL4BQ9NX01 149 aaKnown RBP4.41□□□□□ -1.7
LDLR-209ENST00000558528 ELOVL5Q9NYP7 299 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 CCDC59Q9P031 241 aaKnown RBP4.41□□□□□ -1.7
LDLR-209ENST00000558528 EIF3KQ9UBQ5 218 aaKnown RBP4.41□□□□□ -1.7
LDLR-209ENST00000558528 ZNF629Q9UEG4 869 aaPredicted RBP4.41□□□□□ -1.7
LDLR-209ENST00000558528 ST6GALNAC2Q9UJ37 374 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 ING1Q9UK53 422 aaPredicted RBP4.41□□□□□ -1.7
LDLR-209ENST00000558528 COPS3Q9UNS2 423 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 FOXJ3Q9UPW0 622 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 ZNF835Q9Y2P0 537 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 UGT2A1Q9Y4X1 527 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 LRP12Q9Y561 859 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 PEX16Q9Y5Y5 336 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 FER1L5A0AVI2 2057 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 DCHS2Q6V1P9 2916 aa4.4□□□□□ -1.7
LDLR-209ENST00000558528 A0A075B6Q4 140 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 A0A0U1RQV5 110 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 LOC390937A0A1W2PQ73 354 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 OR4C45A6NMZ5 311 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 DHRS7CA6NNS2 312 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 J3QR06 171 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 MAGEB3O15480 346 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 XRCC2O43543 280 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 GPX5O75715 221 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 CLPXO76031 633 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 CDRT1O95170 752 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 PTBP3O95758 552 aaKnown RBP4.4□□□□□ -1.71
LDLR-209ENST00000558528 LCATP04180 440 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 UCHL1P09936 223 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 SRMP19623 302 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 RAB3BP20337 219 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 AZGP1P25311 298 aaKnown RBP4.4□□□□□ -1.71
LDLR-209ENST00000558528 CEACAM8P31997 349 aaPredicted RBP4.4□□□□□ -1.71
LDLR-209ENST00000558528 APLNRP35414 380 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 PITPNBP48739 271 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 MTCP1P56278 107 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 SSTP61278 116 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 VBP1P61758 197 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 LSM3P62310 102 aaKnown RBP4.4□□□□□ -1.71
LDLR-209ENST00000558528 PPP3R1P63098 170 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 FABP5Q01469 135 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 ENDOGQ14249 297 aaKnown RBP4.4□□□□□ -1.71
LDLR-209ENST00000558528 GUSBP1Q15486 140 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 MOGQ16653 247 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 ZNF404Q494X3 552 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 GLT8D1Q68CQ7 371 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 C22orf42Q6IC83 251 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 TFAP2EQ6VUC0 442 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 SLC16A12Q6ZSM3 486 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 PGAP1Q75T13 922 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 SSX6Q7RTT6 188 aa4.4□□□□□ -1.71
LDLR-209ENST00000558528 NUFIP2Q7Z417 695 aaKnown RBP4.4□□□□□ -1.71
LDLR-209ENST00000558528 CATSPERDQ86XM0 798 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms