RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 PCGF3Q3KNV8 242 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 SNAI3Q3KNW1 292 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 RPUSD3Q6P087 351 aaKnown RBP10.99□□□□□ -0.65
SHMT2-229ENST00000557348 C11orf88Q6PI97 169 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 ATRAIDQ6UW56 229 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 GLIPR1L1Q6UWM5 242 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 COLCA1Q6ZS62 124 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 LHFPL2Q6ZUX7 228 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 TMEM229BQ8NBD8 167 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 STEAP2Q8NFT2 490 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 OR56B1Q8NGI3 324 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 OR5M8Q8NGP6 311 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 WNT2BQ93097 391 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 APOBEC3DQ96AK3 386 aaPredicted RBP10.99□□□□□ -0.65
SHMT2-229ENST00000557348 C1QTNF6Q9BXI9 259 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 BEX1Q9HBH7 125 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 TMEM100Q9NV29 134 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 KLK11Q9UBX7 282 aa10.99□□□□□ -0.65
SHMT2-229ENST00000557348 FAM74A7A6NL05 159 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 GOSR2O14653 212 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 KLK10O43240 276 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 IGHV3-9P01782 118 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 CRYABP02511 175 aaKnown RBP10.98□□□□□ -0.65
SHMT2-229ENST00000557348 VSIG10L2P0DP72 767 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 FAHP16930 419 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 S100PP25815 95 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 AKR1D1P51857 326 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 C3AR1Q16581 482 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 FAM74A3Q4VXF1 159 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 C11orf87Q6NUJ2 197 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 FAM214BQ7L5A3 538 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 NUFIP2Q7Z417 695 aaKnown RBP10.98□□□□□ -0.65
SHMT2-229ENST00000557348 MUC20Q8N307 709 aaPredicted RBP10.98□□□□□ -0.65
SHMT2-229ENST00000557348 SFT2D1Q8WV19 159 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 RNF141Q8WVD5 230 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 SAT2Q96F10 170 aaPredicted RBP10.98□□□□□ -0.65
SHMT2-229ENST00000557348 POM121Q96HA1 1249 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 TMEM59Q9BXS4 323 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 MYEF2Q9P2K5 600 aaKnown RBP10.98□□□□□ -0.65
SHMT2-229ENST00000557348 SLC7A11Q9UPY5 501 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 CSAG2Q9Y5P2 127 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 MED13Q9UHV7 2174 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 CNTRLQ7Z7A1 2325 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 CACNA1AO00555 2505 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 ZNF816-ZNF321PA0A0X1KG74 233 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 hCG_38984A0A1B0GV85 526 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 MKRN2OSH3BPM6 223 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 RAB27BO00194 218 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 SPDEFO95238 335 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 CYB5AP00167 134 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 NAT2P11245 290 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 PTGER4P35408 488 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 APLNRP35414 380 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 PTGFRP43088 359 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 CYCSP99999 105 aaKnown RBP10.98□□□□□ -0.65
SHMT2-229ENST00000557348 PMP22Q01453 160 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 PLA2G7Q13093 441 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 MEF2DQ14814 521 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 TMEM42Q69YG0 159 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 Q6ZS92 163 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 NAA40Q86UY6 237 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 TMEM185AQ8NFB2 350 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 OR4C16Q8NGL9 310 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 OR1K1Q8NGR3 316 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 OR10R2Q8NGX6 335 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 AQP3Q92482 292 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 CNTNAP3BQ96NU0 1288 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 EGLN1Q9GZT9 426 aa10.98□□□□□ -0.65
SHMT2-229ENST00000557348 IGKV1-9A0A0C4DH69 117 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 OR5H14A6NHG9 310 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 E9PLN8 166 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 F8VVB4 439 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 F8VWA3 439 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 WRBO00258 174 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 NUPL2O15504 423 aaKnown RBP10.97□□□□□ -0.65
SHMT2-229ENST00000557348 CDC14BO60729 498 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 GTF2F2P13984 249 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 RBP2P50120 134 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 RAB1AP62820 205 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 MRPL49Q13405 166 aaKnown RBP10.97□□□□□ -0.65
SHMT2-229ENST00000557348 UNC119Q13432 240 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 PPA1Q15181 289 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 ZNF260Q3ZCT1 412 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 EIF5AL1Q6IS14 154 aaKnown RBP10.97□□□□□ -0.65
SHMT2-229ENST00000557348 PAQR4Q8N4S7 273 aaPredicted RBP10.97□□□□□ -0.65
SHMT2-229ENST00000557348 C15orf54Q8N8G6 183 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 CSNK2A3Q8NEV1 391 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 PIGTQ969N2 578 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 SEH1LQ96EE3 360 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 BOD1Q96IK1 185 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 SOX7Q9BT81 388 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.97□□□□□ -0.65
SHMT2-229ENST00000557348 MMP26Q9NRE1 261 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 SLC2A8Q9NY64 477 aa10.97□□□□□ -0.65
SHMT2-229ENST00000557348 POM121CA8CG34 1229 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 CA11O75493 328 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 NRASP01111 189 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 RLN1P04808 185 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 CRHP06850 196 aa10.96□□□□□ -0.65
SHMT2-229ENST00000557348 CD79AP11912 226 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms