RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 MRPL33O75394 65 aaKnown RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 PMCHP20382 165 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 KITLGP21583 273 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 RPS4Y1P22090 263 aaKnown RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 CD38P28907 300 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 DRD3P35462 400 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 GAS1P54826 345 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 TAS2R30P59541 319 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 HLA-DRB3P79483 266 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 NHLH2Q02577 135 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 SMAD4Q13485 552 aaKnown RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ALKBH6Q3KRA9 238 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 PIGYQ3MUY2 71 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 FFAR4Q5NUL3 377 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 FHL5Q5TD97 284 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 BTNL3Q6UXE8 466 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ZNF66Q6ZN08 573 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 SYT13Q7L8C5 426 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 HOGA1Q86XE5 327 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 LIPHQ8WWY8 451 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 SLC25A28Q96A46 364 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 TMEM18Q96B42 140 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ACTR3CQ9C0K3 210 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 AICDAQ9GZX7 198 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 LANCL2Q9NS86 450 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 B4GALT7Q9UBV7 327 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ICAM5Q9UMF0 924 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 AUP1Q9Y679 476 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 SEC14L6B5MCN3 397 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 G3V3Q6 166 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 H7BYZ3 331 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 DVL1O14640 695 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 RPLP1P05386 114 aaKnown RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 RNF224P0DH78 156 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 FUT3P21217 361 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 CSNK1EP49674 416 aaKnown RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 UBE2NP61088 152 aaKnown RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 POLR2GP62487 172 aaKnown RBP eCLIP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ZXDAP98168 799 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 MPV17LQ2QL34 196 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 COL13A1Q5TAT6 717 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 BTNL8Q6UX41 500 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 H2BFWTQ7Z2G1 175 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 SFTPA2Q8IWL1 248 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ARHGEF39Q8N4T4 335 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 OR52M1Q8NGK5 317 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 UBALD1Q8TB05 177 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 FGF14Q92915 247 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 CLDN23Q96B33 292 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 VSTM2LQ96N03 204 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 SPSB2Q99619 263 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 VAMP8Q9BV40 100 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ARV1Q9H2C2 271 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 HIPK2Q9H2X6 1198 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 OR51M1Q9H341 326 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 RLFQ13129 1914 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 SPINK4O60575 86 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 CCL2P13500 99 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 SNCAP37840 140 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 EFNB1P98172 346 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 IL13RA2Q14627 380 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 RAB30Q15771 203 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ZNF385CQ66K41 422 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 FAM58AQ8N1B3 248 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ARRDC1Q8N5I2 433 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 SLC35G3Q8N808 338 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 OR1J1Q8NGS3 322 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 OR11L1Q8NGX0 322 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 SAT2Q96F10 170 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ELOVL1Q9BW60 279 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 POMT1Q9Y6A1 747 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 PIGBOS1A0A0B4J2F0 54 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 NKX2-6A6NCS4 301 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 SERPINE3A8MV23 424 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ACAA1P09110 424 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 MMP9P14780 707 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ZNF25P17030 456 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 PTGER4P35408 488 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 CHRNA7P36544 502 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ZNF260Q3ZCT1 412 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 PDLIM3Q53GG5 364 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 UNQ9370/PRO34162Q6UXP9 181 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 ZNF813Q6ZN06 617 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 MAML2Q8IZL2 1156 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 PTPMT1Q8WUK0 201 aaPredicted RBP4.41□□□□□ -1.7
SYNE2-223ENST00000557005 TXN2Q99757 166 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 SLC25A22Q9H936 323 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 FAM60AQ9NP50 221 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 LHX6Q9UPM6 363 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 GBF1Q92538 1859 aa4.41□□□□□ -1.7
SYNE2-223ENST00000557005 CBY3A6NI87 242 aa4.4□□□□□ -1.7
SYNE2-223ENST00000557005 KLF4O43474 513 aa4.4□□□□□ -1.7
SYNE2-223ENST00000557005 PITX3O75364 302 aa4.4□□□□□ -1.7
SYNE2-223ENST00000557005 CTSDP07339 412 aaPredicted RBP4.4□□□□□ -1.7
SYNE2-223ENST00000557005 ERGP11308 486 aa4.4□□□□□ -1.7
SYNE2-223ENST00000557005 PPP1CBP62140 327 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms