RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 CD1AP06126 327 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 DUX4L2P0CJ85 424 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 DUX4L3P0CJ86 424 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 DUX4L4P0CJ87 422 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 DUX4L5P0CJ88 424 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 DUX4L6P0CJ89 424 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 DUX4L7P0CJ90 424 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 TMEM225BP0DP42 221 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 HNF1AP20823 631 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 MPZP25189 248 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 NPY4RP50391 375 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 RPS11P62280 158 aaKnown RBP eCLIP9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 CHRFAM7AQ494W8 412 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 FAM120AOSQ5T036 256 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 LIPKQ5VXJ0 399 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 STUMQ69YW2 141 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 DUX4L9Q6RFH8 374 aaPredicted RBP9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 IL17RELQ6ZVW7 336 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 SVOPQ8N4V2 548 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 EMG1Q92979 244 aaKnown RBP9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 TMEM203Q969S6 136 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 CPNE2Q96FN4 548 aaPredicted RBP9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 MGLLQ99685 303 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 NRIP2Q9BQI9 281 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 YTHDF1Q9BYJ9 559 aaKnown RBP9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 FAM192AQ9GZU8 254 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 MMP26Q9NRE1 261 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 MTCH1Q9NZJ7 389 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 DUX4Q9UBX2 424 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 HIVEP2P31629 2446 aa9.54□□□□□ -0.88
CCDC88C-212ENST00000556767 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 ARHGAP32A7KAX9 2087 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 LOC105371242A0A075B767 164 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 RFPL4AA6NLU0 287 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 KIAA1324LA8MWY0 1029 aaPredicted RBP9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 A8MXK9 166 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 RFPL4AL1F8VTS6 287 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 TNFRSF13BO14836 293 aaPredicted RBP9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 NOS1APO75052 506 aaPredicted RBP9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 ALX3O95076 343 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 CALCBP10092 127 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 PSG2P11465 335 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 AMY2BP19961 511 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 BCL3P20749 454 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 MAPK3P27361 379 aaPredicted RBP9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 BDKRB2P30411 391 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 SRP14P37108 136 aaKnown RBP9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 TGFBR2P37173 567 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 CAPZA1P52907 286 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 SNU13P55769 128 aaKnown RBP9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 IL13RA1P78552 427 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 MLLT11Q13015 90 aaPredicted RBP9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 PDZK1IP1Q13113 114 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 KISS1Q15726 138 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 TBCEQ15813 527 aaPredicted RBP9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 ACSM3Q53FZ2 586 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 LRRC10Q5BKY1 277 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 DDI2Q5TDH0 399 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 FIP1L1Q6UN15 594 aaKnown RBP9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 BTNL3Q6UXE8 466 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 ZNF367Q7RTV3 350 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 RNF144BQ7Z419 303 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 MS4A15Q8N5U1 240 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 TMEM185AQ8NFB2 350 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 OR52N4Q8NGI2 321 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 ANGPTL6Q8NI99 470 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 THRSPQ92748 146 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 MED30Q96HR3 178 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 DERL3Q96Q80 235 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 C7orf69Q9H7B7 122 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 ELL3Q9HB65 397 aaPredicted RBP9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 SMURF1Q9HCE7 757 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 TMEM138Q9NPI0 162 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 ACOT13Q9NPJ3 140 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 KAAG1Q9UBP8 84 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 CDC42EP3Q9UKI2 254 aa9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 MAP1AP78559 2803 aaPredicted RBP9.53□□□□□ -0.88
CCDC88C-212ENST00000556767 IGKV1D-17A0A075B6S4 117 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 F8VVB4 439 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 F8VWA3 439 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 MRPS14O60783 128 aaKnown RBP9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 CRLF1O75462 422 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 MAS1P04201 325 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 ACAA1P09110 424 aaPredicted RBP9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 SELLP14151 372 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 NDUFB7P17568 137 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 PRKACAP17612 351 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 GATA3P23771 443 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 PRDX2P32119 198 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 NPBWR2P48146 333 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 CEBPDP49716 269 aaPredicted RBP9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 EMX1Q04741 257 aaPredicted RBP9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 GPR50Q13585 617 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 INSL4Q14641 139 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 DGUOKQ16854 277 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 ATPAF1Q5TC12 328 aaPredicted RBP9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 CD276Q5ZPR3 534 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 ASPHD2Q6ICH7 369 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 ZNF841Q6ZN19 808 aa9.52□□□□□ -0.89
CCDC88C-212ENST00000556767 ZNF788Q6ZQV5 615 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms