RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 ZNF100Q8IYN0 542 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 CEND1Q8N111 149 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 MREGQ8N565 214 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 ZNF561Q8N587 486 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 SIDT2Q8NBJ9 832 aaKnown RBP3.25□□□□□ -1.89
PRPF39-209ENST00000556353 NANPQ8TBE9 248 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 NEK7Q8TDX7 302 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 RNF138Q8WVD3 245 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 SLC38A4Q969I6 547 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 TAMM41Q96BW9 452 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 ASB9Q96DX5 294 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 COQ2Q96H96 371 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 FAM210BQ96KR6 192 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 C4orf36Q96KX1 117 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 IMMP1LQ96LU5 166 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 WFIKKN1Q96NZ8 548 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 KIR2DL4Q99706 377 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 NPAS2Q99743 824 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 TBL1YQ9BQ87 522 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 C2orf88Q9BSF0 95 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 NICN1Q9BSH3 213 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 UCK2Q9BZX2 261 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 SPNS1Q9H2V7 528 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 OR51M1Q9H341 326 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 TRABDQ9H4I3 376 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 ELOVL6Q9H5J4 265 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 TMEM231Q9H6L2 316 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 WDR54Q9H977 334 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 ACTR8Q9H981 624 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 ADGRL4Q9HBW9 690 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 NANSQ9NR45 359 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 ASF1BQ9NVP2 202 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 SLC2A8Q9NY64 477 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 DHCR7Q9UBM7 475 aaKnown RBP3.25□□□□□ -1.89
PRPF39-209ENST00000556353 RNF14Q9UBS8 474 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 SLC2A6Q9UGQ3 507 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 SMPXQ9UHP9 88 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 PSG11Q9UQ72 335 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 FARSAQ9Y285 508 aaKnown RBP3.25□□□□□ -1.89
PRPF39-209ENST00000556353 NDUFAF1Q9Y375 327 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 TBL2Q9Y4P3 447 aaKnown RBP3.25□□□□□ -1.89
PRPF39-209ENST00000556353 MMACHCQ9Y4U1 282 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 WIF1Q9Y5W5 379 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 FBN1P35555 2871 aaKnown RBP3.25□□□□□ -1.89
PRPF39-209ENST00000556353 RAI1Q7Z5J4 1906 aaPredicted RBP3.25□□□□□ -1.89
PRPF39-209ENST00000556353 TENM1Q9UKZ4 2725 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 TRAV26-1A0A087WT03 109 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 A0A1B0GTI1 187 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 A0A1W2PQL4 384 aaPredicted RBP3.24□□□□□ -1.89
PRPF39-209ENST00000556353 HACD1B0YJ81 288 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 WWP2O00308 870 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 TCAPO15273 167 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 NUPL2O15504 423 aaKnown RBP3.24□□□□□ -1.89
PRPF39-209ENST00000556353 MED6O75586 246 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 OR2F2O95006 317 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 VAMP5O95183 116 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 CST4P01036 141 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 IGLV1-47P01700 117 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 IGHV3-9P01782 118 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 FTH1P02794 183 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 IFNA4P05014 189 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 ERCC1P07992 297 aaPredicted RBP3.24□□□□□ -1.89
PRPF39-209ENST00000556353 RBP1P09455 135 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 FBP1P09467 338 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 NBEAP1P0C6P0 100 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 SLC2A1P11166 492 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 ATP1B2P14415 290 aaPredicted RBP3.24□□□□□ -1.89
PRPF39-209ENST00000556353 TCP1P17987 556 aaKnown RBP3.24□□□□□ -1.89
PRPF39-209ENST00000556353 TSPAN8P19075 237 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 MDKP21741 143 aaPredicted RBP3.24□□□□□ -1.89
PRPF39-209ENST00000556353 PSMB5P28074 263 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 LAP3P28838 519 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 SLCO1A2P46721 670 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 ERFP50548 548 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 CNN1P51911 297 aaKnown RBP3.24□□□□□ -1.89
PRPF39-209ENST00000556353 RBX1P62877 108 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 PSPHP78330 225 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 PAX5Q02548 391 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 CHI3L2Q15782 390 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 ALKBH6Q3KRA9 238 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 RHBDD2Q6NTF9 364 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 RPL13AP3Q6NVV1 102 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 ULK3Q6PHR2 472 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 HSDL2Q6YN16 418 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 SHISA6Q6ZSJ9 500 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 NET1Q7Z628 596 aaPredicted RBP3.24□□□□□ -1.89
PRPF39-209ENST00000556353 DHFR2Q86XF0 187 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 PRSS58Q8IYP2 241 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 C14orf178Q8N769 122 aaPredicted RBP3.24□□□□□ -1.89
PRPF39-209ENST00000556353 OR51L1Q8NGJ5 315 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 OR5K2Q8NHB8 316 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 GRPEL2Q8TAA5 225 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 ACTRT1Q8TDG2 376 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 LCN9Q8WX39 176 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 MRPL48Q96GC5 212 aaKnown RBP3.24□□□□□ -1.89
PRPF39-209ENST00000556353 TMEM80Q96HE8 168 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 CDKN2AIPNLQ96HQ2 116 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 SERPINB12Q96P63 405 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 TECTBQ96PL2 329 aa3.24□□□□□ -1.89
PRPF39-209ENST00000556353 PANX3Q96QZ0 392 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms