RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 SCGNO76038 276 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 TPPPO94811 219 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 CYB5AP00167 134 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 IGHV3-13P01766 116 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 TMEM225BP0DP42 221 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 EGR1P18146 543 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 ELK1P19419 428 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 CA6P23280 308 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 LOXP28300 417 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-208ENST00000553868 NR4A2P43354 598 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 OR3A4PP47883 348 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 OR8G1Q15617 311 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 PDLIM3Q53GG5 364 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-208ENST00000553868 VHLLQ6RSH7 139 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 GLIPR1L1Q6UWM5 242 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 FAM131AQ6UXB0 335 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 ZNF573Q86YE8 665 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 ZSCAN4Q8NAM6 433 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-208ENST00000553868 OR13G1Q8NGZ3 307 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 KCNG3Q8TAE7 436 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 C15orf40Q8WUR7 153 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 ZFAND2BQ8WV99 257 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 TMEM171Q8WVE6 324 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 PLPPR2Q96GM1 343 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 RNF170Q96K19 258 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 ADAT1Q9BUB4 502 aaKnown RBP12.29□□□□□ -0.44
SHMT2-208ENST00000553868 CA10Q9NS85 328 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 C14orf119Q9NWQ9 140 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 DUSP13Q9UII6 198 aa12.29□□□□□ -0.44
SHMT2-208ENST00000553868 TMEM272A0A1B0GTI8 110 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 PLSCR5A0PG75 271 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 METTL21EPA6NDL7 271 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 TMEM210A6NLX4 147 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 ZNF732B4DXR9 585 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 KDM4BO94953 1096 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 EIF4EP06730 217 aaKnown RBP12.28□□□□□ -0.44
SHMT2-208ENST00000553868 NAT2P11245 290 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 PPP5CP53041 499 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 PITPNAQ00169 270 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 MKXQ8IYA7 352 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 SAXO1Q8IYX7 474 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 PXT1Q8NFP0 134 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 HPSE2Q8WWQ2 592 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 MRPL24Q96A35 216 aaKnown RBP12.28□□□□□ -0.44
SHMT2-208ENST00000553868 RFT1Q96AA3 541 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 ITPKCQ96DU7 683 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 METTL9Q9H1A3 318 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 ELL3Q9HB65 397 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-208ENST00000553868 PALMDQ9NP74 551 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 DIABLOQ9NR28 239 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 ING4Q9UNL4 249 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 RNF115Q9Y4L5 304 aa12.28□□□□□ -0.44
SHMT2-208ENST00000553868 NOTCH1P46531 2555 aa12.27□□□□□ -0.44
SHMT2-208ENST00000553868 TRRAPQ9Y4A5 3859 aa12.27□□□□□ -0.44
SHMT2-208ENST00000553868 IGLV3-9A0A075B6K5 115 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 A0A0A6YYH2 397 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-208ENST00000553868 A6NJ64 397 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 LDLRAD4O15165 306 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 PITPNBP48739 271 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 GPM6AP51674 278 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 ZP1P60852 638 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 PDZK1IP1Q13113 114 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 DCTN2Q13561 401 aaKnown RBP12.27□□□□□ -0.45
SHMT2-208ENST00000553868 IL18Q14116 193 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 RSU1Q15404 277 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 RAB12Q6IQ22 244 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 PYHIN1Q6K0P9 492 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 CMTM4Q8IZR5 234 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 GDPD1Q8N9F7 314 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 OR4M1Q8NGD0 313 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 OR5D18Q8NGL1 313 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 FAM46BQ96A09 425 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 SLC25A38Q96DW6 304 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 URM1Q9BTM9 101 aaKnown RBP12.27□□□□□ -0.45
SHMT2-208ENST00000553868 FZR1Q9UM11 496 aa12.27□□□□□ -0.45
SHMT2-208ENST00000553868 PRKDCP78527 4128 aaKnown RBP12.26□□□□□ -0.45
SHMT2-208ENST00000553868 LRP5LA4QPB2 252 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 TMEM14DPA8MWL7 114 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 LILRA1O75019 489 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 CSTBP04080 98 aaKnown RBP12.26□□□□□ -0.45
SHMT2-208ENST00000553868 VSIG8P0DPA2 414 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 MMP15P51511 669 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 DMRTC1Q5HYR2 192 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 ADAM5Q6NVV9 412 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 C16orf87Q6PH81 154 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 ASCL4Q6XD76 172 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 IL17RELQ6ZVW7 336 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 MRPS24Q96EL2 167 aaKnown RBP12.26□□□□□ -0.45
SHMT2-208ENST00000553868 NKX3-1Q99801 234 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-208ENST00000553868 SYT3Q9BQG1 590 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 CCDC32Q9BV29 185 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 TMEM59Q9BXS4 323 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 PKIBQ9C010 78 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 ATG5Q9H1Y0 275 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 IL36GQ9NZH8 169 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 V9GYH0 126 aa12.26□□□□□ -0.45
SHMT2-208ENST00000553868 IGKV1-27A0A075B6S5 117 aa12.25□□□□□ -0.45
SHMT2-208ENST00000553868 A0A1B0GWJ7 208 aa12.25□□□□□ -0.45
SHMT2-208ENST00000553868 J3QT63 122 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms