RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 C5orf66Q9H5L9 145 aa4.86□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF552Q9H707 407 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-215ENST00000552823 TAS2R3Q9NYW6 316 aa4.86□□□□□ -1.63
LIMA1-215ENST00000552823 AK3Q9UIJ7 227 aa4.86□□□□□ -1.63
LIMA1-215ENST00000552823 CPAMD8Q8IZJ3 1885 aa4.86□□□□□ -1.63
LIMA1-215ENST00000552823 MAP1AP78559 2803 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 A0A087WZY1 265 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 IGKV1-12A0A0C4DH73 117 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 MSGN1A6NI15 193 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF716A6NP11 495 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF732B4DXR9 585 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 B8ZZF3 427 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 LDLRAD4O15165 306 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 GPR37O15354 613 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 YKT6O15498 198 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 IGKV1D-12P01611 117 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 CELA3BP08861 270 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 OR5H8P0DN80 308 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF44P15621 663 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 ATF4P18848 351 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 FSTP19883 344 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 CNR1P21554 472 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 EPHA1P21709 976 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 CA6P23280 308 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 FCGR2CP31995 323 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 ID4P47928 161 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 CEBPGP53567 150 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 RPS16P62249 146 aaKnown RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 IKZF1Q13422 519 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 RAB32Q13637 225 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 MEF2DQ14814 521 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 SLC10A1Q14973 349 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF239Q16600 458 aaKnown RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 AANATQ16613 207 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 IZUMO4Q1ZYL8 232 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 ANKRD55Q3KP44 614 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 FAM27BQ5VT28 67 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF585AQ6P3V2 769 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 CDH26Q8IXH8 852 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 CPT1CQ8TCG5 803 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 APH1AQ96BI3 265 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 OR10C1Q96KK4 312 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 HIST1H2AAQ96QV6 131 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 ADAT1Q9BUB4 502 aaKnown RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 SLCO5A1Q9H2Y9 848 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 SDHAF2Q9NX18 166 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 B4GALT7Q9UBV7 327 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 PFDN2Q9UHV9 154 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 C14orf166Q9Y224 244 aaKnown RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 HSPB2A8KAH6 182 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 SYNGR1O43759 233 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 CNOT4O95628 575 aaKnown RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 CRYZL1O95825 349 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 F12P00748 615 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 CHRM2P08172 466 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 NME2P22392 152 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 CPT2P23786 658 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 RPS27AP62979 156 aaKnown RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 PLP2Q04941 152 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 FOXO1Q12778 655 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 HSPB2Q16082 182 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 IAH1Q2TAA2 248 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 IGSF11Q5DX21 431 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 PEG10Q86TG7 708 aaKnown RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF611Q8N823 705 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 MARS2Q96GW9 593 aaKnown RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 ZC3H10Q96K80 434 aaKnown RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 C1orf147Q96MC9 270 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 TRIB1Q96RU8 372 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 HRH4Q9H3N8 390 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 SCPEP1Q9HB40 452 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 B3GNT2Q9NY97 397 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 OR5AC2Q9NZP5 309 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF292O60281 2723 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 ADGRG4Q8IZF6 3080 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 A6NLC8 198 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 HSD17B6O14756 317 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 HPP00738 406 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 NR2C1P13056 603 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 PRKACAP17612 351 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 BCL3P20749 454 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 ZBTB25P24278 435 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 FABP6P51161 128 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 RAG2P55895 527 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 LSM6P62312 80 aaKnown RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 MRPS34P82930 218 aaKnown RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 QRFPP83859 136 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 TLE1Q04724 770 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 PDSS1Q5T2R2 415 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 ZSCAN4Q8NAM6 433 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 ST8SIA2Q92186 375 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 TMEM54Q969K7 222 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 MRPL24Q96A35 216 aaKnown RBP4.85□□□□□ -1.63
LIMA1-215ENST00000552823 FAM173AQ9BQD7 235 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 UQCC2Q9BRT2 126 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 TREM2Q9NZC2 230 aa4.85□□□□□ -1.63
LIMA1-215ENST00000552823 IGLV3-32A0A0A0MS00 114 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 RPS10-NUDT3A0A1W2PQS6 291 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 B4E171 279 aa4.84□□□□□ -1.63
LIMA1-215ENST00000552823 SIRPB1O00241 398 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms