RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 CAV3P56539 151 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 FGF12P61328 243 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 CCL8P80075 99 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 UNC119Q13432 240 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 DMRTC1Q5HYR2 192 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 ATPAF1Q5TC12 328 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-211ENST00000552338 TEX36Q5VZQ5 186 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 MZT2AQ6P582 158 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 HAGHLQ6PII5 290 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-211ENST00000552338 GLIPR1L1Q6UWM5 242 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 SLC25A26Q70HW3 274 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 LINC00596Q86U02 117 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 OR51D1Q8NGF3 324 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 NPRL2Q8WTW4 380 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 TNFAIP8L1Q8WVP5 186 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 RAB40AQ8WXH6 277 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 RDH5Q92781 318 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 HPS1Q92902 700 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 NINJ1Q92982 152 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 MBD6Q96DN6 1003 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 GPER1Q99527 375 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 GSX2Q9BZM3 304 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 UBTD1Q9HAC8 227 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 PLGRKTQ9HBL7 147 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 DECR2Q9NUI1 292 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 RNF7Q9UBF6 113 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 RAB22AQ9UL26 194 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 EDARQ9UNE0 448 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 PPP1R3CQ9UQK1 317 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 NPTNQ9Y639 398 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 USF3Q68DE3 2245 aa8.07□□□□□ -1.12
LIMA1-211ENST00000552338 HRNRQ86YZ3 2850 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-211ENST00000552338 DSCAML1Q8TD84 2053 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 IGHV1-69-2A0A0G2JMI3 117 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 TMEM272A0A1B0GTI8 110 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 FOXI3A8MTJ6 420 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-211ENST00000552338 TMEM178BH3BS89 294 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 H3BUI4 141 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-211ENST00000552338 SYNGR1O43759 233 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 RHBDL1O75783 438 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 APOA1P02647 267 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 HPXP02790 462 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 GLAP06280 429 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 GRPP07492 148 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 SFTPBP07988 381 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 CHRM2P08172 466 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 TMEM225BP0DP42 221 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 GTF2F2P13984 249 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 MUC1P15941 1255 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-211ENST00000552338 CPT2P23786 658 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 ETV6P41212 452 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 MNDAP41218 407 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 IL13RA2Q14627 380 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 SPIN3Q5JUX0 258 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 IDNKQ5T6J7 187 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 HES5Q5TA89 166 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 PRAMEF6Q5VXH4 476 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 ZNF787Q6DD87 383 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 AWAT2Q6E213 333 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 DNM1P46Q6ZS02 220 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 LRRC28Q86X40 367 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-211ENST00000552338 C1orf87Q8N0U7 546 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 LRRC75A-AS1Q8N1F1 130 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 ZCCHC24Q8N2G6 241 aaKnown RBP8.06□□□□□ -1.12
LIMA1-211ENST00000552338 CEP19Q96LK0 163 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 Q96M66 194 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 SOSTQ9BQB4 213 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 CST11Q9H112 138 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 DNTTIP1Q9H147 329 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 CXorf56Q9H5V9 222 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 SMURF1Q9HCE7 757 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 HMG20AQ9NP66 347 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.06□□□□□ -1.12
LIMA1-211ENST00000552338 TMEM106BQ9NUM4 274 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 RABL2AQ9UBK7 228 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-211ENST00000552338 RABL2BQ9UNT1 228 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 PEX16Q9Y5Y5 336 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 ARID1AO14497 2285 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 AKAP6Q13023 2319 aa8.06□□□□□ -1.12
LIMA1-211ENST00000552338 TENM4Q6N022 2769 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 TRAPPC2LH3BP13 241 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 SPRY1O43609 319 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-211ENST00000552338 ANGPTL7O43827 346 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 CDC14BO60729 498 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 CLPXO76031 633 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 SCGNO76038 276 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 PAHP00439 452 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 KNG1P01042 644 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 CSTBP04080 98 aaKnown RBP8.05□□□□□ -1.12
LIMA1-211ENST00000552338 PTBP1P26599 531 aaKnown RBP eCLIP8.05□□□□□ -1.12
LIMA1-211ENST00000552338 GIFP27352 417 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 NPBWR2P48146 333 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 TMEM33P57088 247 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 RPS27AP62979 156 aaKnown RBP8.05□□□□□ -1.12
LIMA1-211ENST00000552338 PAX5Q02548 391 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 RSU1Q15404 277 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 MPV17LQ2QL34 196 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 RAB12Q6IQ22 244 aa8.05□□□□□ -1.12
LIMA1-211ENST00000552338 METAP1DQ6UB28 335 aaPredicted RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms