RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 RSPO1Q2MKA7 263 aaPredicted RBP5.14□□□□□ -1.59
LIMA1-204ENST00000549064 LRRC10Q5BKY1 277 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 PIK3CD-AS1Q5SR53 167 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 KCTD18Q6PI47 426 aaPredicted RBP5.14□□□□□ -1.59
LIMA1-204ENST00000549064 WDR86Q86TI4 376 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 NKAIN4Q8IVV8 208 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 MSRB3Q8IXL7 192 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 C11orf53Q8IXP5 236 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 LRRC75AQ8NAA5 344 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 OR4X2Q8NGF9 303 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 OR9I1Q8NGQ6 314 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 LRRC8CQ8TDW0 803 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 TMEM255BQ8WV15 326 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 SPRYD4Q8WW59 207 aaPredicted RBP5.14□□□□□ -1.59
LIMA1-204ENST00000549064 CORO2AQ92828 525 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 ITCHQ96J02 903 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 DUX3Q96PT4 197 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 INTS14Q96SY0 518 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 SORT1Q99523 831 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 WACQ9BTA9 647 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 ABHD6Q9BV23 337 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 MAP6D1Q9H9H5 199 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 SEBOXQ9HB31 216 aaPredicted RBP5.14□□□□□ -1.59
LIMA1-204ENST00000549064 CHMP1AQ9HD42 196 aaPredicted RBP5.14□□□□□ -1.59
LIMA1-204ENST00000549064 SLC25A37Q9NYZ2 338 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 AURKCQ9UQB9 309 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 KMT2AQ03164 3969 aa5.14□□□□□ -1.59
LIMA1-204ENST00000549064 CD300LBA8K4G0 201 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 VGLL3A8MV65 326 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 IMPA2O14732 288 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 ALDOBP05062 364 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 SNRNP70P08621 437 aaKnown RBP5.13□□□□□ -1.59
LIMA1-204ENST00000549064 MUC1P15941 1255 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-204ENST00000549064 MYF6P23409 242 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 RPL14P50914 215 aaKnown RBP5.13□□□□□ -1.59
LIMA1-204ENST00000549064 RAB25P57735 213 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 ABCE1P61221 599 aaKnown RBP5.13□□□□□ -1.59
LIMA1-204ENST00000549064 CKAP4Q07065 602 aaKnown RBP5.13□□□□□ -1.59
LIMA1-204ENST00000549064 MZT1Q08AG7 82 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 MEP1BQ16820 701 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 LDLRAD2Q5SZI1 272 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 GGNBP1Q5YKI7 109 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 STUMQ69YW2 141 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 CORO6Q6QEF8 472 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 ZNF782Q6ZMW2 699 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-204ENST00000549064 PGAP1Q75T13 922 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 MRPL21Q7Z2W9 205 aaKnown RBP5.13□□□□□ -1.59
LIMA1-204ENST00000549064 MICU2Q8IYU8 434 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 OR51D1Q8NGF3 324 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 OR9Q1Q8NGQ5 310 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 FNDC8Q8TC99 324 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 RPS4Y2Q8TD47 263 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 GTF2H4Q92759 462 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 GRAMD2BQ96HH9 432 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 GAFA1Q96PS6 74 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 WDR13Q9H1Z4 485 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 IKZF5Q9H5V7 419 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 RERGLQ9H628 205 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 WDR55Q9H6Y2 383 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-204ENST00000549064 RMND5AQ9H871 391 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 EDA2RQ9HAV5 297 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 ABCB10Q9NRK6 738 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 ZMAT5Q9UDW3 170 aaKnown RBP5.13□□□□□ -1.59
LIMA1-204ENST00000549064 ZNF391Q9UJN7 358 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 ALMS1Q8TCU4 4167 aa5.13□□□□□ -1.59
LIMA1-204ENST00000549064 TRAV27A0A087WT01 109 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 F5H5K5 113 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 M0QX08 132 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 GMDSO60547 372 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 SERPINB7O75635 380 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 LCATP04180 440 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 ACSM4P0C7M7 580 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 PAICSP22234 425 aaKnown RBP5.12□□□□□ -1.59
LIMA1-204ENST00000549064 AZGP1P25311 298 aaKnown RBP5.12□□□□□ -1.59
LIMA1-204ENST00000549064 CEBPDP49716 269 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-204ENST00000549064 RPL23AP62750 156 aaKnown RBP5.12□□□□□ -1.59
LIMA1-204ENST00000549064 ZNF91Q05481 1191 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 SSX2Q16385 188 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 VWC2Q2TAL6 325 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 SPATS1Q496A3 300 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 MESTQ5EB52 335 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 WDR82Q6UXN9 313 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 ZNF66Q6ZN08 573 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 ZNF788Q6ZQV5 615 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 TEX45Q8NA69 505 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 OR52H1Q8NGJ2 320 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 OR5D13Q8NGL4 314 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 OR2AE1Q8NHA4 323 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 UBLCP1Q8WVY7 318 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-204ENST00000549064 LIPHQ8WWY8 451 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 ISOC1Q96CN7 298 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 P2RX4Q99571 388 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 COQ7Q99807 217 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 EVA1AQ9H8M9 152 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 C19orf12Q9NSK7 152 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 MSRB1Q9NZV6 116 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 ATPIF1Q9UII2 106 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 POLR1DQ9Y2S0 133 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 LHFPL6Q9Y693 200 aa5.12□□□□□ -1.59
LIMA1-204ENST00000549064 SMAD5-AS1Q9Y6J3 95 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms