RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 NPHP4O75161 1426 aaPredicted RBP2.26□□□□□ -2.05
VPS29-205ENST00000548539 CLDN34H7C241 214 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 ZNF593O00488 134 aaPredicted RBP2.26□□□□□ -2.05
VPS29-205ENST00000548539 CCL2P13500 99 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 CELP19835 753 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 ACOT2P49753 483 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 UBE2KP61086 200 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 GPR176Q14439 515 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 GUSBP1Q15486 140 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 VAMP3Q15836 100 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 FBXL19-AS1Q494R0 122 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 ACTL10Q5JWF8 245 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 RESP18Q5W5W9 173 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 DAZ4Q86SG3 579 aaKnown RBP2.26□□□□□ -2.05
VPS29-205ENST00000548539 ST13P4Q8IZP2 240 aaPredicted RBP2.26□□□□□ -2.05
VPS29-205ENST00000548539 LINC00337Q8N6G1 96 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 APCDD1LQ8NCL9 501 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 CLHC1Q8NHS4 586 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 DOK4Q8TEW6 326 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 TMIGD2Q96BF3 282 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 CIB1Q99828 191 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 CTRCQ99895 268 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 ZNF649Q9BS31 505 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 SHCBP1LQ9BZQ2 653 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 DAZ1Q9NQZ3 744 aaKnown RBP2.26□□□□□ -2.05
VPS29-205ENST00000548539 RMND1Q9NWS8 449 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 DHCR7Q9UBM7 475 aaKnown RBP2.26□□□□□ -2.05
VPS29-205ENST00000548539 ACOT9Q9Y305 439 aa2.26□□□□□ -2.05
VPS29-205ENST00000548539 KIF26AQ9ULI4 1882 aaPredicted RBP2.26□□□□□ -2.05
VPS29-205ENST00000548539 IGHV3OR16-8A0A075B7F1 116 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 SPRR5A0A1B0GTR4 108 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 C16orf90A8MZG2 172 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 MFNGO00587 321 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 RLN2P04090 185 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 ATP5G2Q06055 141 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 C18orf21Q32NC0 220 aaPredicted RBP2.25□□□□□ -2.05
VPS29-205ENST00000548539 ZNF678Q5SXM1 525 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 IDNKQ5T6J7 187 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 KPRPQ5T749 579 aaPredicted RBP2.25□□□□□ -2.05
VPS29-205ENST00000548539 LIN9Q5TKA1 542 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 TBPL2Q6SJ96 375 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 FAM131AQ6UXB0 335 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 LRRC8AQ8IWT6 810 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 CYP4Z2PQ8N1L4 340 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 GAPTQ8N292 157 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 OR52N1Q8NH53 320 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 FAM57AQ8TBR7 257 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 ORAOV1Q8WV07 137 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 TNFRSF14Q92956 283 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 CPB2Q96IY4 423 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 ZNF396Q96N95 335 aaPredicted RBP2.25□□□□□ -2.05
VPS29-205ENST00000548539 QKIQ96PU8 341 aaKnown RBP eCLIP2.25□□□□□ -2.05
VPS29-205ENST00000548539 SPACA5Q96QH8 159 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 OR2M4Q96R27 311 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 VAT1Q99536 393 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 SCRT1Q9BWW7 348 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 C12orf4Q9NQ89 552 aa2.25□□□□□ -2.05
VPS29-205ENST00000548539 KLF13Q9Y2Y9 288 aaPredicted RBP2.25□□□□□ -2.05
VPS29-205ENST00000548539 ERICH4A6NGS2 130 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 hCG_2039718K7EN88 272 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 TCAPO15273 167 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 ZMPSTE24O75844 475 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 OR2A4O95047 310 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 NRASP01111 189 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 HRASP01112 189 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 KRASP01116 189 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 APOA1P02647 267 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 CD5P06127 495 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 CDK1P06493 297 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 OR4Q2P0C623 313 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 GIMD1P0DJR0 217 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 TAC1P20366 129 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 MPV17P39210 176 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 IDH2P48735 452 aaKnown RBP2.24□□□□□ -2.05
VPS29-205ENST00000548539 HADHBP55084 474 aaKnown RBP2.24□□□□□ -2.05
VPS29-205ENST00000548539 TOMM34Q15785 309 aaPredicted RBP2.24□□□□□ -2.05
VPS29-205ENST00000548539 ACTBL2Q562R1 376 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 KCTD16Q68DU8 428 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 MORN3Q6PF18 240 aaPredicted RBP2.24□□□□□ -2.05
VPS29-205ENST00000548539 UGT2A3Q6UWM9 527 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 CASP12Q6UXS9 341 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 FAM231DQ6ZW35 169 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 FAM19A1Q7Z5A9 133 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 SGPP2Q8IWX5 399 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 TCAIMQ8N3R3 496 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 RNF10Q8N5U6 811 aaKnown RBP2.24□□□□□ -2.05
VPS29-205ENST00000548539 KLF14Q8TD94 323 aaPredicted RBP2.24□□□□□ -2.05
VPS29-205ENST00000548539 ZNF75AQ96N20 296 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 RILPQ96NA2 401 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 OR2A7Q96R45 310 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 PRORYQ9H606 182 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 ASB7Q9H672 318 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 PLEKHA1Q9HB21 404 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 RBM22Q9NW64 420 aaKnown RBP eCLIP2.24□□□□□ -2.05
VPS29-205ENST00000548539 STX18Q9P2W9 335 aaKnown RBP2.24□□□□□ -2.05
VPS29-205ENST00000548539 NXT1Q9UKK6 140 aaKnown RBP2.24□□□□□ -2.05
VPS29-205ENST00000548539 INSIG2Q9Y5U4 225 aa2.24□□□□□ -2.05
VPS29-205ENST00000548539 FAM25EA8MYX2 175 aa2.23□□□□□ -2.05
VPS29-205ENST00000548539 CXorf1O96002 111 aa2.23□□□□□ -2.05
VPS29-205ENST00000548539 CD8AP01732 235 aa2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms