RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 OIT3Q8WWZ8 545 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 MUCL1Q96DR8 90 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 CYB5R1Q9UHQ9 305 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 TRAV39A0A0B4J263 110 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 TO15178 435 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 ALDH3B1P43353 468 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 PIGYQ3MUY2 71 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 ZNF485Q8NCK3 441 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 OR14K1Q8NGZ2 314 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 OR8U1Q8NH10 309 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 PPP1R35Q8TAP8 253 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 S100PBPQ96BU1 408 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 PLK3Q9H4B4 646 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 PLXND1Q9Y4D7 1925 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 SFT2D2O95562 160 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 OR5AC1P0C628 307 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 LIFP15018 202 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 PTAFRP25105 342 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 ECI1P42126 302 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 OR8G1Q15617 311 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 ZNF468Q5VIY5 522 aaPredicted RBP13.79□□□□□ -0.2
CUX1-211ENST00000546411 SSX9Q7RTT3 188 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 TUSC5Q8IXB3 177 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 ZNF519Q8TB69 540 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 SPSB2Q99619 263 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 PECRQ9BY49 303 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 LHFPL6Q9Y693 200 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 SLC22A20A6NK97 555 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 CHATP28329 748 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 ERVK-16P61578 105 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 ZNF266Q14584 549 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 ALKBH6Q3KRA9 238 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 RPL7L1Q6DKI1 246 aaKnown RBP13.79□□□□□ -0.2
CUX1-211ENST00000546411 FAM173AQ9BQD7 235 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 FZR1Q9UM11 496 aa13.79□□□□□ -0.2
CUX1-211ENST00000546411 TRBV5-7A0A0A0MS05 114 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 HMSDA8MTL9 139 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 SERPINA7P05543 415 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 HPNP05981 417 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 MAGEA5P43359 124 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 LCN15Q6UWW0 184 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 SLC30A7Q8NEW0 376 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 TP53TG5Q9Y2B4 290 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 IFNA4P05014 189 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 MST1P26927 711 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 SRPXP78539 464 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 SPEM2Q0P670 501 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 BPIFCQ8NFQ6 507 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 TPPPO94811 219 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 GP1BAP07359 652 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 LINC00114Q6XXX2 140 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 TMEM123Q8N131 208 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 PRRX2Q99811 253 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 HS3ST3B1Q9Y662 390 aa13.78□□□□□ -0.2
CUX1-211ENST00000546411 NFYBP25208 207 aa13.77□□□□□ -0.2
CUX1-211ENST00000546411 TRA2AQ13595 282 aaKnown RBP eCLIP13.77□□□□□ -0.2
CUX1-211ENST00000546411 GGNBP1Q5YKI7 109 aa13.77□□□□□ -0.2
CUX1-211ENST00000546411 PMS2CLQ68D20 193 aa13.77□□□□□ -0.2
CUX1-211ENST00000546411 OR5B12Q96R08 314 aa13.77□□□□□ -0.2
CUX1-211ENST00000546411 ZNF407Q9C0G0 2248 aa13.77□□□□□ -0.2
CUX1-211ENST00000546411 LYZL6O75951 148 aa13.77□□□□□ -0.21
CUX1-211ENST00000546411 CRHP06850 196 aa13.77□□□□□ -0.21
CUX1-211ENST00000546411 TLE1Q04724 770 aa13.77□□□□□ -0.21
CUX1-211ENST00000546411 GPR137Q96N19 417 aa13.77□□□□□ -0.21
CUX1-211ENST00000546411 GCM1Q9NP62 436 aa13.77□□□□□ -0.21
CUX1-211ENST00000546411 COL6A6A6NMZ7 2263 aa13.77□□□□□ -0.21
CUX1-211ENST00000546411 E5RGE8 158 aa13.77□□□□□ -0.21
CUX1-211ENST00000546411 MT-CO3P00414 261 aa13.77□□□□□ -0.21
CUX1-211ENST00000546411 LSM6P62312 80 aaKnown RBP13.77□□□□□ -0.21
CUX1-211ENST00000546411 PRDX4Q13162 271 aa13.77□□□□□ -0.21
CUX1-211ENST00000546411 MPPED2Q15777 294 aa13.77□□□□□ -0.21
CUX1-211ENST00000546411 RFESDQ8TAC1 157 aa13.77□□□□□ -0.21
CUX1-211ENST00000546411 TCTEX1D2Q8WW35 142 aa13.77□□□□□ -0.21
CUX1-211ENST00000546411 RAB33BQ9H082 229 aa13.77□□□□□ -0.21
CUX1-211ENST00000546411 NSG2Q9Y328 171 aa13.77□□□□□ -0.21
CUX1-211ENST00000546411 IGKV3D-11A0A0A0MRZ8 115 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 CD1AP06126 327 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 H2AFB1P0C5Y9 115 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 SSPNQ14714 243 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 ZNF573Q86YE8 665 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 DNASE2BQ8WZ79 361 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 HGDQ93099 445 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 APOBEC3DQ96AK3 386 aaPredicted RBP13.76□□□□□ -0.21
CUX1-211ENST00000546411 RTL8AQ9BWD3 113 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 RHOFQ9HBH0 211 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 ATG12O94817 140 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 IFNA10P01566 189 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 S100PP25815 95 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 MSMO1Q15800 293 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 TUSC1Q2TAM9 212 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 DEFB109BQ30KR1 87 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 FAM122CQ6P4D5 195 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 SLC25A42Q86VD7 318 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 RPS4Y2Q8TD47 263 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 SAP25Q8TEE9 199 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 PLEKHF2Q9H8W4 249 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 TMEM9BQ9NQ34 198 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 ANXA10Q9UJ72 324 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 ZNF724A8MTY0 619 aa13.76□□□□□ -0.21
CUX1-211ENST00000546411 PGA4P0DJD7 388 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms