RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 IL2RAP01589 272 aa12.37□□□□□ -0.43
VPS33A-209ENST00000544349 RLN2P04090 185 aa12.37□□□□□ -0.43
VPS33A-209ENST00000544349 TMEM50BP56557 158 aa12.37□□□□□ -0.43
VPS33A-209ENST00000544349 FAM3AP98173 230 aa12.37□□□□□ -0.43
VPS33A-209ENST00000544349 RIPPLY1Q0D2K3 151 aa12.37□□□□□ -0.43
VPS33A-209ENST00000544349 MICBQ29980 383 aa12.37□□□□□ -0.43
VPS33A-209ENST00000544349 ZNF324BQ6AW86 544 aaPredicted RBP12.37□□□□□ -0.43
VPS33A-209ENST00000544349 RTL6Q6ICC9 239 aa12.37□□□□□ -0.43
VPS33A-209ENST00000544349 RGS7BPQ6MZT1 257 aaPredicted RBP12.37□□□□□ -0.43
VPS33A-209ENST00000544349 SPSB4Q96A44 273 aa12.37□□□□□ -0.43
VPS33A-209ENST00000544349 SEC22AQ96IW7 307 aa12.37□□□□□ -0.43
VPS33A-209ENST00000544349 WDR13Q9H1Z4 485 aa12.37□□□□□ -0.43
VPS33A-209ENST00000544349 PLSCR4Q9NRQ2 329 aa12.37□□□□□ -0.43
VPS33A-209ENST00000544349 SDHAF2Q9NX18 166 aa12.37□□□□□ -0.43
VPS33A-209ENST00000544349 COQ3Q9NZJ6 369 aa12.37□□□□□ -0.43
VPS33A-209ENST00000544349 RAXQ9Y2V3 346 aa12.37□□□□□ -0.43
VPS33A-209ENST00000544349 C9orf170A2RU37 121 aa12.36□□□□□ -0.43
VPS33A-209ENST00000544349 MFSD2BA6NFX1 497 aa12.36□□□□□ -0.43
VPS33A-209ENST00000544349 WDR1O75083 606 aa12.36□□□□□ -0.43
VPS33A-209ENST00000544349 HIST1H1DP16402 221 aaKnown RBP12.36□□□□□ -0.43
VPS33A-209ENST00000544349 GSK3AP49840 483 aa12.36□□□□□ -0.43
VPS33A-209ENST00000544349 OR2W3Q7Z3T1 314 aa12.36□□□□□ -0.43
VPS33A-209ENST00000544349 C1QL2Q7Z5L3 287 aa12.36□□□□□ -0.43
VPS33A-209ENST00000544349 ZNF75AQ96N20 296 aa12.36□□□□□ -0.43
VPS33A-209ENST00000544349 LINC00052Q96N35 136 aa12.36□□□□□ -0.43
VPS33A-209ENST00000544349 TMEM59Q9BXS4 323 aa12.36□□□□□ -0.43
VPS33A-209ENST00000544349 ZNF71Q9NQZ8 489 aaPredicted RBP12.36□□□□□ -0.43
VPS33A-209ENST00000544349 OR5H14A6NHG9 310 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 CRTAPO75718 401 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-209ENST00000544349 TNFSF13O75888 250 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 LYZL6O75951 148 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 ATP1B3P54709 279 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 UCNP55089 124 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 PRSS12P56730 875 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 SRSF4Q08170 494 aaKnown RBP12.35□□□□□ -0.43
VPS33A-209ENST00000544349 ATXN7L3Q14CW9 347 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-209ENST00000544349 KISS1Q15726 138 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 GABRA6Q16445 453 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 MDP1Q86V88 176 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 ZDHHC22Q8N966 263 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 Q8NA96 180 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 MARCH1Q8TCQ1 289 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 CASTOR1Q8WTX7 329 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 ASB13Q8WXK3 278 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 RAB3CQ96E17 227 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 ARHGAP5-AS1Q96IT6 56 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 GPER1Q99527 375 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 NUDT16L1Q9BRJ7 211 aaKnown RBP12.35□□□□□ -0.43
VPS33A-209ENST00000544349 ANAPC10Q9UM13 185 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 PLEKHA6Q9Y2H5 1048 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 SVILO95425 2214 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 MFNGO00587 321 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 PTGER4P35408 488 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 APLNRP35414 380 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 GMFBP60983 142 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 ZMYND11Q15326 602 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 OR8B8Q15620 311 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 CCDC36Q8IYA8 594 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 SLC38A6Q8IZM9 456 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 OR10K1Q8NGX5 313 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 OR4K15Q8NH41 348 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 APOBEC3DQ96AK3 386 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-209ENST00000544349 DHRS9Q9BPW9 319 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 PDCD10Q9BUL8 212 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 GPR173Q9NS66 373 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 FAM215AQ9Y5M1 114 aa12.35□□□□□ -0.43
VPS33A-209ENST00000544349 CACNA1GO43497 2377 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 FIGNL2A6NMB9 653 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 SCGNO76038 276 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 CGAP01215 116 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 SERPINA5P05154 406 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 AKR1C4P17516 323 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 COX5AP20674 150 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 VAMP1P23763 118 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 CALCRP30988 508 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 ARPC4P59998 168 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 CLVS2Q5SYC1 327 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 C1orf185Q5T7R7 199 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 TMEM42Q69YG0 159 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 ZNF546Q86UE3 836 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 HOGA1Q86XE5 327 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 PNLDC1Q8NA58 520 aaKnown RBP12.34□□□□□ -0.43
VPS33A-209ENST00000544349 RELL2Q8NC24 303 aaPredicted RBP12.34□□□□□ -0.43
VPS33A-209ENST00000544349 OR1S1Q8NH92 325 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 KCNG3Q8TAE7 436 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 FAM57AQ8TBR7 257 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 MITD1Q8WV92 249 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 PPP1R1CQ8WVI7 109 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 STARD4Q96DR4 205 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 MICU1Q9BPX6 476 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 RNF222A6NCQ9 220 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 FAM25EA8MYX2 175 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 UBE2NP61088 152 aaKnown RBP12.34□□□□□ -0.43
VPS33A-209ENST00000544349 BEX5Q5H9J7 111 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 LPCAT3Q6P1A2 487 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 CISD2Q8N5K1 135 aaKnown RBP12.34□□□□□ -0.43
VPS33A-209ENST00000544349 MAFIPQ8WZ33 124 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 PIGTQ969N2 578 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 BOD1Q96IK1 185 aa12.34□□□□□ -0.43
VPS33A-209ENST00000544349 REPIN1Q9BWE0 567 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms