RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 SMIM3Q9BZL3 60 aa10.92□□□□□ -0.66
RNF4-222ENST00000541204 BIN3Q9NQY0 253 aa10.92□□□□□ -0.66
RNF4-222ENST00000541204 DEPPQ9NTK1 212 aa10.92□□□□□ -0.66
RNF4-222ENST00000541204 FOXJ2Q9P0K8 574 aa10.92□□□□□ -0.66
RNF4-222ENST00000541204 MCTS1Q9ULC4 181 aaKnown RBP10.92□□□□□ -0.66
RNF4-222ENST00000541204 MEMO1Q9Y316 297 aa10.92□□□□□ -0.66
RNF4-222ENST00000541204 PCDHGA1Q9Y5H4 931 aa10.92□□□□□ -0.66
RNF4-222ENST00000541204 DHRS7CA6NNS2 312 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 PATE4P0C8F1 98 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 PRF1P14222 555 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 GABRR1P24046 479 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 RPL12P30050 165 aaKnown RBP10.91□□□□□ -0.66
RNF4-222ENST00000541204 RBMXP38159 391 aaKnown RBP10.91□□□□□ -0.66
RNF4-222ENST00000541204 AVPI1Q5T686 147 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 ETV3LQ6ZN32 361 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 SEMA6DQ8NFY4 1073 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 ZNF2Q9BSG1 426 aaPredicted RBP10.91□□□□□ -0.66
RNF4-222ENST00000541204 CNTNAP3Q9BZ76 1288 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 ULBP2Q9BZM5 246 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 PARP12Q9H0J9 701 aaKnown RBP10.91□□□□□ -0.66
RNF4-222ENST00000541204 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.91□□□□□ -0.66
RNF4-222ENST00000541204 R4GN57 208 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 B4E171 279 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 K7EPK0 472 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 M0R296 226 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 TAAR5O14804 337 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 FCGR3AP08637 254 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 CD63P08962 238 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 SP9P0CG40 484 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 NAT2P11245 290 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 MSR1P21757 451 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 TSPAN7P41732 249 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 EIF5AL1Q6IS14 154 aaKnown RBP10.91□□□□□ -0.66
RNF4-222ENST00000541204 FAM71E2Q8N5Q1 922 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 ZIC4Q8N9L1 334 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 S100A13Q99584 98 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 C1orf123Q9NWV4 160 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 COA4Q9NYJ1 87 aa10.91□□□□□ -0.66
RNF4-222ENST00000541204 PINLYPA6NC86 204 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 CXCL13O43927 109 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 EIF1BO60739 113 aaKnown RBP10.9□□□□□ -0.66
RNF4-222ENST00000541204 HEXAP06865 529 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 NTF4P34130 210 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 SULT1A2P50226 295 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 RAC1P63000 192 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 EIF5AP63241 154 aaKnown RBP10.9□□□□□ -0.66
RNF4-222ENST00000541204 CTAG1AP78358 180 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 PEA15Q15121 130 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 KCNMB1Q16558 191 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 BTNL8Q6UX41 500 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 CLEC9AQ6UXN8 241 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 THOC3Q96J01 351 aaKnown RBP10.9□□□□□ -0.66
RNF4-222ENST00000541204 ALKBH3Q96Q83 286 aaPredicted RBP10.9□□□□□ -0.66
RNF4-222ENST00000541204 SULT4A1Q9BR01 284 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 NAA11Q9BSU3 229 aaPredicted RBP10.9□□□□□ -0.66
RNF4-222ENST00000541204 PLEK2Q9NYT0 353 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 FBXL17Q9UF56 701 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 LSM5Q9Y4Y9 91 aaKnown RBP10.9□□□□□ -0.66
RNF4-222ENST00000541204 SERPINE3A8MV23 424 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 C9orf172C9J069 976 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 DHHO43323 396 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 SCGB1D2O95969 90 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 CST4P01036 141 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 IGHV3-9P01782 118 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 CD5P06127 495 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 OR8U9P0C7N5 309 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 FKBP2P26885 142 aaKnown RBP10.9□□□□□ -0.66
RNF4-222ENST00000541204 FCGR2CP31995 323 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 SUCLG1P53597 346 aaKnown RBP10.9□□□□□ -0.66
RNF4-222ENST00000541204 CARD18P57730 90 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 ENDOGQ14249 297 aaKnown RBP10.9□□□□□ -0.66
RNF4-222ENST00000541204 FAM76BQ5HYJ3 339 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 TMEM268Q5VZI3 342 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 DHRS11Q6UWP2 260 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 Q6ZRG5 221 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 SULF2Q8IWU5 870 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 OR8U1Q8NH10 309 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 SGCZQ96LD1 299 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 STRADBQ9C0K7 418 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 NELFAQ9H3P2 528 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 PLEKHJ1Q9NW61 149 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 GHRLQ9UBU3 117 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 PIGLQ9Y2B2 252 aa10.9□□□□□ -0.66
RNF4-222ENST00000541204 A0A1W2PNU3 283 aaPredicted RBP10.89□□□□□ -0.67
RNF4-222ENST00000541204 DHRS3O75911 302 aa10.89□□□□□ -0.67
RNF4-222ENST00000541204 ZNF205O95201 554 aa10.89□□□□□ -0.67
RNF4-222ENST00000541204 CPT2P23786 658 aa10.89□□□□□ -0.67
RNF4-222ENST00000541204 GDF1P27539 372 aa10.89□□□□□ -0.67
RNF4-222ENST00000541204 AKR1C3P42330 323 aa10.89□□□□□ -0.67
RNF4-222ENST00000541204 TMEM33P57088 247 aa10.89□□□□□ -0.67
RNF4-222ENST00000541204 SRYQ05066 204 aa10.89□□□□□ -0.67
RNF4-222ENST00000541204 SURF2Q15527 256 aaPredicted RBP10.89□□□□□ -0.67
RNF4-222ENST00000541204 TMEM123Q8N131 208 aa10.89□□□□□ -0.67
RNF4-222ENST00000541204 FNDC9Q8TBE3 224 aa10.89□□□□□ -0.67
RNF4-222ENST00000541204 MRPL24Q96A35 216 aaKnown RBP10.89□□□□□ -0.67
RNF4-222ENST00000541204 AKR1E2Q96JD6 320 aa10.89□□□□□ -0.67
RNF4-222ENST00000541204 LOC400499M0QZD8 3231 aa10.89□□□□□ -0.67
RNF4-222ENST00000541204 LOC102725191A0A1B0GVB3 256 aa10.89□□□□□ -0.67
RNF4-222ENST00000541204 DEDDO75618 318 aa10.89□□□□□ -0.67
RNF4-222ENST00000541204 IGLV3-1P01715 115 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 246.8 ms