RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 A8MUU9 505 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 D6RAR5 112 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 K7ERS5 55 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 ZNF593O00488 134 aaPredicted RBP1.47□□□□□ -2.17
CD44-238ENST00000534296 RFXANKO14593 260 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 CSTAP01040 98 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 IGHV1-46P01743 117 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 S100A9P06702 114 aaKnown RBP1.47□□□□□ -2.17
CD44-238ENST00000534296 PFN1P07737 140 aaKnown RBP1.47□□□□□ -2.17
CD44-238ENST00000534296 TPM1P09493 284 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 NELFEP18615 380 aaKnown RBP1.47□□□□□ -2.17
CD44-238ENST00000534296 IL3RAP26951 378 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 HTR2CP28335 458 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 SLC6A1P30531 599 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 CMC4P56277 68 aaPredicted RBP1.47□□□□□ -2.17
CD44-238ENST00000534296 OR12D2P58182 307 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 STX4Q12846 297 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 BNIP2Q12982 314 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 VAMP3Q15836 100 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 LGALSLQ3ZCW2 172 aaPredicted RBP1.47□□□□□ -2.17
CD44-238ENST00000534296 RESP18Q5W5W9 173 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 FAM131AQ6UXB0 335 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 USP50Q70EL3 339 aaPredicted RBP1.47□□□□□ -2.17
CD44-238ENST00000534296 FA2HQ7L5A8 372 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 SSX6Q7RTT6 188 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 CA13Q8N1Q1 262 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 ZDHHC22Q8N966 263 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 OR4A15Q8NGL6 344 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 OR51Q1Q8NH59 317 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 IFT81Q8WYA0 676 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 CDKL2Q92772 493 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 SMARCD1Q96GM5 515 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 UBE2E2Q96LR5 201 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 RILPQ96NA2 401 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 ZFP3Q96NJ6 502 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 CIB1Q99828 191 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 ANAPC13Q9BS18 74 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 TSGA10Q9BZW7 698 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 SRRQ9GZT4 340 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 ABCG5Q9H222 651 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 OR51B5Q9H339 312 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 FBXO44Q9H4M3 255 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 ACOT9Q9Y305 439 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 TRAPPC1Q9Y5R8 145 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 INSIG2Q9Y5U4 225 aa1.47□□□□□ -2.17
CD44-238ENST00000534296 RP1L1Q8IWN7 2480 aaPredicted RBP1.46□□□□□ -2.18
CD44-238ENST00000534296 KIAA1671Q9BY89 1806 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 GSTTP1A0A1W2PQM5 241 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 ANKRD20A5PA0PJZ0 165 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 CD300LBA8K4G0 201 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 LEUTXA8MZ59 168 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 CLDN34H7C241 214 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 NDUFS8O00217 210 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 SPOPO43791 374 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 SLC37A4O43826 429 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 COX7A2P2O60397 106 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 IGLV6-57P01721 117 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 CELP19835 753 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 GNRHRP30968 328 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 TGM4P49221 684 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 ACOT2P49753 483 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 XKP51811 444 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 CARD18P57730 90 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 MLF1P58340 268 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 VSNL1P62760 191 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 IL15RAQ13261 267 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 ELOCQ15369 112 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 TOMM34Q15785 309 aaPredicted RBP1.46□□□□□ -2.18
CD44-238ENST00000534296 TAL2Q16559 108 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 NDUFAF6Q330K2 333 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 MRPL2Q5T653 305 aaKnown RBP1.46□□□□□ -2.18
CD44-238ENST00000534296 SLC25A25Q6KCM7 469 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 C16orf87Q6PH81 154 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 C16orf47Q6ZP98 133 aaPredicted RBP1.46□□□□□ -2.18
CD44-238ENST00000534296 LRP11Q86VZ4 500 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 C10orf107Q8IVU9 208 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 NELFCDQ8IXH7 590 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 CPNE9Q8IYJ1 553 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 OR8G5Q8NG78 346 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 OR8A1Q8NGG7 326 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 OR6K3Q8NGY3 331 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 CMTM2Q8TAZ6 248 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 TWIST2Q8WVJ9 160 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 NELFBQ8WX92 580 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 ZNF75CPQ92670 426 aaPredicted RBP1.46□□□□□ -2.18
CD44-238ENST00000534296 OTUB2Q96DC9 234 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 PPP1R36Q96LQ0 422 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 YPEL4Q96NS1 127 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 QKIQ96PU8 341 aaKnown RBP eCLIP1.46□□□□□ -2.18
CD44-238ENST00000534296 DERL3Q96Q80 235 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 SHANK2-AS3Q9BTD1 123 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 DUSP21Q9H596 190 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 PARP11Q9NR21 331 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 DIABLOQ9NR28 239 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 ASF1BQ9NVP2 202 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 TAC3Q9UHF0 121 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 VAX2Q9UIW0 290 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 STK38LQ9Y2H1 464 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 WIF1Q9Y5W5 379 aa1.46□□□□□ -2.18
CD44-238ENST00000534296 CACNA1GO43497 2377 aa1.45□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms