RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 ZNF404Q494X3 552 aa11.72□□□□□ -0.53
USF1-209ENST00000529476 TMEM155Q4W5P6 130 aa11.72□□□□□ -0.53
USF1-209ENST00000529476 TEX36Q5VZQ5 186 aa11.72□□□□□ -0.53
USF1-209ENST00000529476 LRRTM1Q86UE6 522 aa11.72□□□□□ -0.53
USF1-209ENST00000529476 FAM90A1Q86YD7 464 aa11.72□□□□□ -0.53
USF1-209ENST00000529476 MUC20Q8N307 709 aaPredicted RBP11.72□□□□□ -0.53
USF1-209ENST00000529476 COX4I2Q96KJ9 171 aa11.72□□□□□ -0.53
USF1-209ENST00000529476 GPER1Q99527 375 aa11.72□□□□□ -0.53
USF1-209ENST00000529476 NRIP2Q9BQI9 281 aa11.72□□□□□ -0.53
USF1-209ENST00000529476 TMEM246Q9BRR3 403 aa11.72□□□□□ -0.53
USF1-209ENST00000529476 TCF7L1Q9HCS4 588 aa11.72□□□□□ -0.53
USF1-209ENST00000529476 SNTG1Q9NSN8 517 aa11.72□□□□□ -0.53
USF1-209ENST00000529476 DNAJB11Q9UBS4 358 aa11.72□□□□□ -0.53
USF1-209ENST00000529476 TRAV38-1A0A0B4J264 116 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 IGKV1-12A0A0C4DH73 117 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 CEACAM18A8MTB9 384 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 F8VVB4 439 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 F8VWA3 439 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 NOS1APO75052 506 aaPredicted RBP11.71□□□□□ -0.53
USF1-209ENST00000529476 ARL6IP5O75915 188 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 IGKV1D-12P01611 117 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 GYPAP02724 150 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 TMEM225BP0DP42 221 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 SRMP19623 302 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 BCL3P20749 454 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 GADD45AP24522 165 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 CALRP27797 417 aaKnown RBP11.71□□□□□ -0.53
USF1-209ENST00000529476 ZNF93P35789 620 aaPredicted RBP11.71□□□□□ -0.53
USF1-209ENST00000529476 OR3A4PP47883 348 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 NPBWR2P48146 333 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 ERVK11-1P61568 191 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 LMO4P61968 165 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 MICBQ29980 383 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 LYPD2Q6UXB3 125 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 ACP7Q6ZNF0 438 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 MKXQ8IYA7 352 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 SPICQ8N5J4 248 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 OR5T2Q8NGG2 359 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 OR51F2Q8NH61 342 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 TNFAIP8L1Q8WVP5 186 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 PHYHIPQ92561 330 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 TMIGD2Q96BF3 282 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 C18orf12Q96KH6 178 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 CEP19Q96LK0 163 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 MRPS26Q9BYN8 205 aaKnown RBP11.71□□□□□ -0.53
USF1-209ENST00000529476 OR51E2Q9H255 320 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 ZNF665Q9H7R5 613 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 EXOSC4Q9NPD3 245 aaKnown RBP11.71□□□□□ -0.53
USF1-209ENST00000529476 PCDHB10Q9UN67 800 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 STUB1Q9UNE7 303 aa11.71□□□□□ -0.53
USF1-209ENST00000529476 NSD1Q96L73 2696 aaPredicted RBP11.71□□□□□ -0.54
USF1-209ENST00000529476 TNFRSF13BO14836 293 aaPredicted RBP11.7□□□□□ -0.54
USF1-209ENST00000529476 NXPH2O95156 264 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 CYB5AP00167 134 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 IGHV2-5P01817 119 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 TFF1P04155 84 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 ACAA1P09110 424 aaPredicted RBP11.7□□□□□ -0.54
USF1-209ENST00000529476 MUC1P15941 1255 aaPredicted RBP11.7□□□□□ -0.54
USF1-209ENST00000529476 GALP22466 123 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 C22orf42Q6IC83 251 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 DCDC5Q6ZRR9 648 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 C1QL2Q7Z5L3 287 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 JAGN1Q8N5M9 183 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 NKAIN3Q8N8D7 197 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 YIPF6Q96EC8 236 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 CPNE2Q96FN4 548 aaPredicted RBP11.7□□□□□ -0.54
USF1-209ENST00000529476 FAM192AQ9GZU8 254 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 SLITRK2Q9H156 845 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 PATZ1Q9HBE1 687 aaKnown RBP11.7□□□□□ -0.54
USF1-209ENST00000529476 HES4Q9HCC6 221 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 SMURF1Q9HCE7 757 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 RBFOX1Q9NWB1 397 aaKnown RBP11.7□□□□□ -0.54
USF1-209ENST00000529476 TXNL4BQ9NX01 149 aaKnown RBP11.7□□□□□ -0.54
USF1-209ENST00000529476 RASL12Q9NYN1 266 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 NLKQ9UBE8 527 aa11.7□□□□□ -0.54
USF1-209ENST00000529476 VPS13CQ709C8 3753 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 SHISA3A0PJX4 238 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 MEGF11A6BM72 1044 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 FAM157AC9JC47 383 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 TRAPPC2LH3BP13 241 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 KDM4BO94953 1096 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 SFTPBP07988 381 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 WNT2P09544 360 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 CALCBP10092 127 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 AMY2BP19961 511 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 PTGFRP43088 359 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 SEC61A1P61619 476 aaKnown RBP11.69□□□□□ -0.54
USF1-209ENST00000529476 KCNJ8Q15842 424 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 TMEM249Q2WGJ8 235 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 SMIM21Q3B7S5 101 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 STUMQ69YW2 141 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 LYPD6Q86Y78 171 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 SAXO1Q8IYX7 474 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 ZSCAN4Q8NAM6 433 aaPredicted RBP11.69□□□□□ -0.54
USF1-209ENST00000529476 C12orf43Q96C57 262 aaKnown RBP11.69□□□□□ -0.54
USF1-209ENST00000529476 CCL13Q99616 98 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 GFI1Q99684 422 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 CHCHD6Q9BRQ6 235 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 CNTD2Q9H8S5 307 aa11.69□□□□□ -0.54
USF1-209ENST00000529476 SSR3Q9UNL2 185 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms