RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TIMP3P35625 211 aa17.77■□□□□ 0.43
VPS28-209ENST00000528142 GPM6AP51674 278 aa17.77■□□□□ 0.43
VPS28-209ENST00000528142 EIF2S3LQ2VIR3 472 aaKnown RBP17.77■□□□□ 0.43
VPS28-209ENST00000528142 SCGB2B2Q4G0G5 96 aa17.77■□□□□ 0.43
VPS28-209ENST00000528142 VAX1Q5SQQ9 334 aa17.77■□□□□ 0.43
VPS28-209ENST00000528142 SPATA46Q5T0L3 261 aa17.77■□□□□ 0.43
VPS28-209ENST00000528142 ATPAF1Q5TC12 328 aaPredicted RBP17.77■□□□□ 0.43
VPS28-209ENST00000528142 OR2T2Q6IF00 324 aa17.77■□□□□ 0.43
VPS28-209ENST00000528142 SAXO1Q8IYX7 474 aa17.77■□□□□ 0.43
VPS28-209ENST00000528142 Q8NA96 180 aa17.77■□□□□ 0.43
VPS28-209ENST00000528142 BHLHE23Q8NDY6 225 aa17.77■□□□□ 0.43
VPS28-209ENST00000528142 OR52B4Q8NGK2 314 aa17.77■□□□□ 0.43
VPS28-209ENST00000528142 MYOZ1Q9NP98 299 aaPredicted RBP17.77■□□□□ 0.43
VPS28-209ENST00000528142 ZNF69Q9UC07 566 aa17.77■□□□□ 0.43
VPS28-209ENST00000528142 NPTNQ9Y639 398 aa17.77■□□□□ 0.43
VPS28-209ENST00000528142 TMEM82A0PJX8 343 aa17.76■□□□□ 0.43
VPS28-209ENST00000528142 ANKRD30BLA7E2S9 258 aa17.76■□□□□ 0.43
VPS28-209ENST00000528142 ZNF732B4DXR9 585 aa17.76■□□□□ 0.43
VPS28-209ENST00000528142 CHATP28329 748 aa17.76■□□□□ 0.43
VPS28-209ENST00000528142 ERP29P30040 261 aaKnown RBP17.76■□□□□ 0.43
VPS28-209ENST00000528142 HOXC12P31275 282 aa17.76■□□□□ 0.43
VPS28-209ENST00000528142 PPP1CBP62140 327 aa17.76■□□□□ 0.43
VPS28-209ENST00000528142 PIGYQ3MUY2 71 aa17.76■□□□□ 0.43
VPS28-209ENST00000528142 ACTBL2Q562R1 376 aa17.76■□□□□ 0.43
VPS28-209ENST00000528142 GEMIN2O14893 280 aaKnown RBP17.75■□□□□ 0.43
VPS28-209ENST00000528142 FABP7O15540 132 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 AGFG2O95081 481 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 HAAOP46952 286 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 NPBWR2P48146 333 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 TMPRSS3P57727 454 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 DAZAP2Q15038 168 aaPredicted RBP17.75■□□□□ 0.43
VPS28-209ENST00000528142 NKAPLQ5M9Q1 402 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 BEND4Q6ZU67 534 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 TMEM200AQ86VY9 491 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 EMG1Q92979 244 aaKnown RBP17.75■□□□□ 0.43
VPS28-209ENST00000528142 POM121Q96HA1 1249 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 HIST1H2AAQ96QV6 131 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 C1QTNF6Q9BXI9 259 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 OBP2BQ9NPH6 170 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 ST3GAL6Q9Y274 331 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 BSNQ9UPA5 3926 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 IL2RAP01589 272 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 TDGF1P3P51864 188 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 UCP2P55851 309 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 RBM11P57052 281 aaKnown RBP17.75■□□□□ 0.43
VPS28-209ENST00000528142 ELP2Q6IA86 826 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 UNQ6494/PRO21346Q6UXR6 183 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 SPICQ8N5J4 248 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 CAPSLQ8WWF8 208 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 RADILQ96JH8 1075 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 FAAP24Q9BTP7 215 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 ST6GALNAC5Q9BVH7 336 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 OR2J1Q9GZK6 312 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 ZNF230Q9UIE0 474 aaPredicted RBP17.75■□□□□ 0.43
VPS28-209ENST00000528142 VSIG4Q9Y279 399 aa17.75■□□□□ 0.43
VPS28-209ENST00000528142 MSTNO14793 375 aa17.74■□□□□ 0.43
VPS28-209ENST00000528142 IFNA6P05013 189 aa17.74■□□□□ 0.43
VPS28-209ENST00000528142 ZNF35P13682 527 aa17.74■□□□□ 0.43
VPS28-209ENST00000528142 CEACAM8P31997 349 aaPredicted RBP17.74■□□□□ 0.43
VPS28-209ENST00000528142 ERVS71-1P61550 626 aa17.74■□□□□ 0.43
VPS28-209ENST00000528142 MRPS15P82914 257 aaKnown RBP17.74■□□□□ 0.43
VPS28-209ENST00000528142 BHLHA15Q7RTS1 189 aaPredicted RBP17.74■□□□□ 0.43
VPS28-209ENST00000528142 OR10AD1Q8NGE0 317 aa17.74■□□□□ 0.43
VPS28-209ENST00000528142 OR2AT4A6NND4 320 aa17.73■□□□□ 0.43
VPS28-209ENST00000528142 IGLV1-44P01699 117 aa17.73■□□□□ 0.43
VPS28-209ENST00000528142 HOXD4P09016 255 aaPredicted RBP17.73■□□□□ 0.43
VPS28-209ENST00000528142 AMY2BP19961 511 aa17.73■□□□□ 0.43
VPS28-209ENST00000528142 SNU13P55769 128 aaKnown RBP17.73■□□□□ 0.43
VPS28-209ENST00000528142 IFITM2Q01629 132 aa17.73■□□□□ 0.43
VPS28-209ENST00000528142 ZNF474Q6S9Z5 364 aaPredicted RBP17.73■□□□□ 0.43
VPS28-209ENST00000528142 MUC20Q8N307 709 aaPredicted RBP17.73■□□□□ 0.43
VPS28-209ENST00000528142 ZDHHC22Q8N966 263 aa17.73■□□□□ 0.43
VPS28-209ENST00000528142 CCDC107Q8WV48 283 aa17.73■□□□□ 0.43
VPS28-209ENST00000528142 CCDC120Q96HB5 630 aa17.73■□□□□ 0.43
VPS28-209ENST00000528142 SULT4A1Q9BR01 284 aa17.73■□□□□ 0.43
VPS28-209ENST00000528142 ZNF436Q9C0F3 470 aaPredicted RBP17.73■□□□□ 0.43
VPS28-209ENST00000528142 DSPP15924 2871 aaKnown RBP17.73■□□□□ 0.43
VPS28-209ENST00000528142 PIEZO2Q9H5I5 2752 aa17.73■□□□□ 0.43
VPS28-209ENST00000528142 OR5H1A6NKK0 313 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 OR5B21A6NL26 309 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 RAC2P15153 192 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 BCL3P20749 454 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 C3P1Q6ZMU1 363 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 ARRDC1Q8N5I2 433 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 CISD2Q8N5K1 135 aaKnown RBP17.72■□□□□ 0.43
VPS28-209ENST00000528142 SLC25A40Q8TBP6 338 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 SLAMF9Q96A28 289 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 HDHD3Q9BSH5 251 aaPredicted RBP17.72■□□□□ 0.43
VPS28-209ENST00000528142 DLL4Q9NR61 685 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 MTCH1Q9NZJ7 389 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 AK3Q9UIJ7 227 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 UBE2QL1A1L167 161 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 OR4E1P0C645 316 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 CA6P23280 308 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 NLRC3Q7RTR2 1065 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 TMED4Q7Z7H5 227 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 FAM169BQ8N8A8 192 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 OR1J1Q8NGS3 322 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 OR5H2Q8NGV7 314 aa17.72■□□□□ 0.43
VPS28-209ENST00000528142 ZNF431Q8TF32 576 aaPredicted RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms